RNA–Protein interactions for RNA: ENST00000532602.1

PCDHA9-202, Transcript of protocadherin alpha 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA9, Length 6,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-202ENST00000532602 ZNF160Q9HCG1 818 aa13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 OBP2AQ9NY56 170 aa13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 LOC102725191A0A1B0GVB3 256 aa13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 CLCA1A8K7I4 914 aa13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 RPS17P08708 135 aaKnown RBP13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 CAPN3P20807 821 aa13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 CSNK1A1P48729 337 aa13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 AFF3P51826 1226 aaKnown RBP13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 LRRC20Q8TCA0 184 aa13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 TRUB1Q8WWH5 349 aaKnown RBP13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 TBC1D20Q96BZ9 403 aa13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 CTRCQ99895 268 aa13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 CUTCQ9NTM9 273 aa13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 NXT1Q9UKK6 140 aaKnown RBP13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 FBXL3Q9UKT7 428 aa13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 STUB1Q9UNE7 303 aa13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 EVPLQ92817 2033 aa13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 PLSCR5A0PG75 271 aa13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 FUT1P19526 365 aa13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 GABARAPL2P60520 117 aa13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 SMAD2Q15796 467 aaKnown RBP13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 ANKRD33Q7Z3H0 272 aa13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 SLC22A16Q86VW1 577 aa13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 DPH1Q9BZG8 443 aa13.9□□□□□ -0.18
PCDHA9-202ENST00000532602 TRIM64BA6NI03 449 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 ACPPP15309 386 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 HIST1H1TP22492 207 aaPredicted RBP13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 AKR1C2P52895 323 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 TMEM205Q6UW68 189 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 STOML3Q8TAV4 291 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 ANKRD30BLA7E2S9 258 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 FBP2O00757 339 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 HMGN2P05204 90 aaKnown RBP13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 CHRNB4P30926 498 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 PCGF2P35227 344 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 PGFP49763 221 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 OR51L1Q8NGJ5 315 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 C22orf15Q8WYQ4 148 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 HS3ST2Q9Y278 367 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 F10P00742 488 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 SELENOWP63302 87 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 CCNJQ5T5M9 372 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 ENDOVQ8N8Q3 282 aaKnown RBP13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 OR5J2Q8NH18 312 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 USB1Q9BQ65 265 aaKnown RBP13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 ENKD1Q9H0I2 346 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 GABRR3A8MPY1 467 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 MITFO75030 526 aaPredicted RBP13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 DNAJB6O75190 326 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 GPR75O95800 540 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 S100A2P29034 98 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 C9orf50Q5SZB4 431 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 DCST2Q5T1A1 773 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 ELMOD2Q8IZ81 293 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 KDM1BQ8NB78 822 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 ANKK1Q8NFD2 765 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 COQ8AQ8NI60 647 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 TMEM239Q8WW34 195 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 ZC3H10Q96K80 434 aaKnown RBP13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 OR6C1Q96RD1 312 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 TXLNGYQ9BZA5 131 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 DNAJB11Q9UBS4 358 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 MLXQ9UH92 298 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 A0A1W2PPW3 197 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 MROH6A6NGR9 719 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 M0R036 132 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 STSP08842 583 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 IDUAP35475 653 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 IST1P53990 364 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 DEFA5Q01523 94 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 PRDX1Q06830 199 aaKnown RBP13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 STK11Q15831 433 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 AWAT2Q6E213 333 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 BORAQ6PGQ7 559 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 GPR149Q86SP6 731 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 OR9Q2Q8NGE9 314 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 RAB39BQ96DA2 213 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 BEX2Q9BXY8 128 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 BEX1Q9HBH7 125 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 ZFP57Q9NU63 452 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 FAM118AQ9NWS6 357 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 CNIH4Q9P003 139 aa13.89□□□□□ -0.19
PCDHA9-202ENST00000532602 EEF1E1O43324 174 aaKnown RBP13.88□□□□□ -0.19
PCDHA9-202ENST00000532602 MAS1P04201 325 aa13.88□□□□□ -0.19
PCDHA9-202ENST00000532602 SDC1P18827 310 aa13.88□□□□□ -0.19
PCDHA9-202ENST00000532602 C22orf42Q6IC83 251 aa13.88□□□□□ -0.19
PCDHA9-202ENST00000532602 ZNF595Q8IYB9 648 aa13.88□□□□□ -0.19
PCDHA9-202ENST00000532602 OR5L1Q8NGL2 311 aa13.88□□□□□ -0.19
PCDHA9-202ENST00000532602 SLC2A12Q8TD20 617 aa13.88□□□□□ -0.19
PCDHA9-202ENST00000532602 C3orf30Q96M34 536 aa13.88□□□□□ -0.19
PCDHA9-202ENST00000532602 SLC30A3Q99726 388 aa13.88□□□□□ -0.19
PCDHA9-202ENST00000532602 GAREM1Q9H706 876 aa13.88□□□□□ -0.19
PCDHA9-202ENST00000532602 USP36Q9P275 1121 aaKnown RBP13.88□□□□□ -0.19
PCDHA9-202ENST00000532602 SMCO3A2RU48 225 aa13.88□□□□□ -0.19
PCDHA9-202ENST00000532602 MPPED1O15442 326 aa13.88□□□□□ -0.19
PCDHA9-202ENST00000532602 RAB3BP20337 219 aa13.88□□□□□ -0.19
PCDHA9-202ENST00000532602 MAN2A2P49641 1150 aa13.88□□□□□ -0.19
PCDHA9-202ENST00000532602 ATXN7L3Q14CW9 347 aaPredicted RBP13.88□□□□□ -0.19
PCDHA9-202ENST00000532602 OR14A16Q8NHC5 309 aa13.88□□□□□ -0.19
PCDHA9-202ENST00000532602 WBP2Q969T9 261 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms