RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, human

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF1-208	ENST00000532560	BLOC1S3	Q6QNY0	202 aa		13.65	□□□□□ -0.22
CPSF1-208	ENST00000532560	MAMDC2	Q7Z304	686 aa	Predicted RBP	13.65	□□□□□ -0.22
CPSF1-208	ENST00000532560	C16orf62	Q7Z3J2	963 aa		13.65	□□□□□ -0.22
CPSF1-208	ENST00000532560	RNF130	Q86XS8	419 aa		13.65	□□□□□ -0.22
CPSF1-208	ENST00000532560	FUNDC1	Q8IVP5	155 aa		13.65	□□□□□ -0.22
CPSF1-208	ENST00000532560	PM20D2	Q8IYS1	436 aa		13.65	□□□□□ -0.22
CPSF1-208	ENST00000532560	ULK2	Q8IYT8	1036 aa		13.65	□□□□□ -0.22
CPSF1-208	ENST00000532560	RPRML	Q8N4K4	120 aa		13.65	□□□□□ -0.22
CPSF1-208	ENST00000532560	ABTB1	Q969K4	478 aa	Predicted RBP	13.65	□□□□□ -0.22
CPSF1-208	ENST00000532560	ZNF385D	Q9H6B1	395 aa		13.65	□□□□□ -0.22
CPSF1-208	ENST00000532560	POLE3	Q9NRF9	147 aa		13.65	□□□□□ -0.22
CPSF1-208	ENST00000532560	SLC6A13	Q9NSD5	602 aa		13.65	□□□□□ -0.22
CPSF1-208	ENST00000532560	PLEKHB1	Q9UF11	243 aa	Predicted RBP	13.65	□□□□□ -0.22
CPSF1-208	ENST00000532560	TRIM33	Q9UPN9	1127 aa		13.65	□□□□□ -0.22
CPSF1-208	ENST00000532560	FAM215A	Q9Y5M1	114 aa		13.65	□□□□□ -0.22
CPSF1-208	ENST00000532560	PHF3	Q92576	2039 aa	Known RBP	13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	NPIPA5	A0A0B4J1W7	369 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560		A0A0G2JND7	137 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560		A1L4Q6	167 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	NPIPA7	E9PJI5	369 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	HMGN4	O00479	90 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	KIAA0513	O60268	411 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	KRT75	O95678	551 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	GSN	P06396	782 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	NPIPA8	P0DM63	369 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	CHM	P24386	653 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	MSX1	P28360	303 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	ATP12A	P54707	1039 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	FUT5	Q11128	374 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	CD226	Q15762	336 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	C6orf10	Q5SRN2	563 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	C1orf185	Q5T7R7	199 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	AP1AR	Q63HQ0	302 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	AAGAB	Q6PD74	315 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	B3GNT6	Q6ZMB0	384 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	MRGPRG	Q86SM5	289 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	ZFP90	Q8TF47	636 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	XAGE5	Q8WWM1	108 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	OIT3	Q8WWZ8	545 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	GTF2H4	Q92759	462 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	RAB8B	Q92930	207 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	SFXN2	Q96NB2	322 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	CCDC167	Q9P0B6	97 aa		13.64	□□□□□ -0.23
CPSF1-208	ENST00000532560	AHRR	A9YTQ3	701 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560		H3BNH8	94 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	NR5A2	O00482	541 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	C1QC	P02747	245 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	GP1BB	P13224	206 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	HOXB9	P17482	250 aa	Predicted RBP	13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	HK1	P19367	917 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	LHX2	P50458	406 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	RASSF2	P50749	326 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	NUP107	P57740	925 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	B3GALT5-AS1	P59052	145 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	ART3	Q13508	389 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	SF3B4	Q15427	424 aa	Known RBP eCLIP	13.63	□□□□□ -0.23	2e-6	■■■□□ 15.5
CPSF1-208	ENST00000532560	ZNF141	Q15928	474 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	ZNF630	Q2M218	657 aa	Predicted RBP	13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	GLYR1	Q49A26	553 aa	Predicted RBP	13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	GTDC1	Q4AE62	458 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	ACSF3	Q4G176	576 aa	Predicted RBP	13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	RAET1L	Q5VY80	246 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	METTL21C	Q5VZV1	264 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	CGB2	Q6NT52	195 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	SLC2A7	Q6PXP3	512 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	ENPP6	Q6UWR7	440 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	GATS	Q8NAP1	163 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	SPDL1	Q96EA4	605 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	WDYHV1	Q96HA8	205 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	RAB3IP	Q96QF0	476 aa	Predicted RBP	13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	TTYH2	Q9BSA4	534 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	SAP130	Q9H0E3	1048 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	SLC52A3	Q9NQ40	469 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	RPH3A	Q9Y2J0	694 aa	Predicted RBP	13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	DTNA	Q9Y4J8	743 aa		13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560	KLF2	Q9Y5W3	355 aa	Predicted RBP	13.63	□□□□□ -0.23
CPSF1-208	ENST00000532560		A0A087WZY1	265 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560		A0A096LPI6	279 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	LINC01387	J3KSC0	135 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	FCMR	O60667	390 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	TNFRSF21	O75509	655 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	UBOX5	O94941	541 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	ANP32D	O95626	131 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	GLI4	P10075	376 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	CPN1	P15169	458 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	ZNF17	P17021	662 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	NCF2	P19878	526 aa	Predicted RBP	13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	CAPN3	P20807	821 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	MNAT1	P51948	309 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	MVD	P53602	400 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	SUMO3	P55854	103 aa	Predicted RBP	13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	HPCA	P84074	193 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	ZNF117	Q03924	483 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	TMEM44	Q2T9K0	475 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	AGK	Q53H12	422 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	COX20	Q5RI15	118 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	PDZK1	Q5T2W1	519 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	LRIF1	Q5T3J3	769 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	TYW3	Q6IPR3	259 aa	Known RBP	13.62	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms