RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 GLRX2Q9NS18 164 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 ACSS1Q9NUB1 689 aaPredicted RBP10.16□□□□□ -0.78
VPS28-214ENST00000531032 MED17Q9NVC6 651 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 CLEC4AQ9UMR7 237 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 ROS1P08922 2347 aa10.16□□□□□ -0.78
VPS28-214ENST00000531032 TLN2Q9Y4G6 2542 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 A0A0J9YW62 118 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 A0A1W2PQD3 144 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 TRIM64A6NGJ6 449 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 TRIM64BA6NI03 449 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 ESPNB1AK53 854 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 TNFSF11O14788 317 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 AZIN1O14977 448 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 CXCL13O43927 109 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 ZNF500O60304 480 aaPredicted RBP10.15□□□□□ -0.78
VPS28-214ENST00000531032 NID1P14543 1247 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 PTH2RP49190 550 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 ZNF41P51814 821 aaPredicted RBP10.15□□□□□ -0.78
VPS28-214ENST00000531032 PRKAG1P54619 331 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 NR1H2P55055 460 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 MANFP55145 182 aaKnown RBP10.15□□□□□ -0.78
VPS28-214ENST00000531032 DUSP5Q16690 384 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 RFTN2Q52LD8 501 aaPredicted RBP10.15□□□□□ -0.78
VPS28-214ENST00000531032 CPTPQ5TA50 214 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 PPP4R4Q6NUP7 873 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 ZCCHC12Q6PEW1 402 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 FIGNL1Q6PIW4 674 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 PLEKHM3Q6ZWE6 761 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 C4orf33Q8N1A6 199 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 GATSQ8NAP1 163 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 OR2V1Q8NHB1 315 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 FBXO30Q8TB52 745 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 POC1BQ8TC44 478 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 NUDT8Q8WV74 236 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 RNF145Q96MT1 663 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 TSSK3Q96PN8 268 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 KLHDC3Q9BQ90 382 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 TMEM204Q9BSN7 226 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 OR10A4Q9H209 315 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 C12orf65Q9H3J6 166 aaKnown RBP10.15□□□□□ -0.78
VPS28-214ENST00000531032 TUBB1Q9H4B7 451 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 ANKZF1Q9H8Y5 726 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 FANCFQ9NPI8 374 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 UBQLN4Q9NRR5 601 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 SH3BP4Q9P0V3 963 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 TMED5Q9Y3A6 229 aa10.15□□□□□ -0.78
VPS28-214ENST00000531032 DNHD1Q96M86 4753 aa10.15□□□□□ -0.79
VPS28-214ENST00000531032 UQCRHLA0A096LP55 91 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 SCDO00767 359 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 LSM1O15116 133 aaKnown RBP10.14□□□□□ -0.79
VPS28-214ENST00000531032 AKAP10O43572 662 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 TMCC2O75069 709 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 SYNGR4O95473 234 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 HSPA4LO95757 839 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 OPN1LWP04000 364 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 ALOX5P09917 674 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 LINGO3P0C6S8 592 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 HPGDP15428 266 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 KRT4P19013 534 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 PSMB1P20618 241 aaKnown RBP10.14□□□□□ -0.79
VPS28-214ENST00000531032 ME2P23368 584 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 AGTR1P30556 359 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 SERPINB4P48594 390 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 VSNL1P62760 191 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 RPL38P63173 70 aaKnown RBP10.14□□□□□ -0.79
VPS28-214ENST00000531032 MLC1Q15049 377 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 CD226Q15762 336 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 KANK2Q63ZY3 851 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 HBMQ6B0K9 141 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 ZNF704Q6ZNC4 412 aaPredicted RBP10.14□□□□□ -0.79
VPS28-214ENST00000531032 BEND4Q6ZU67 534 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 SZRD1Q7Z422 152 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 TRABD2AQ86V40 505 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 RIBC1Q8N443 379 aaPredicted RBP10.14□□□□□ -0.79
VPS28-214ENST00000531032 COX18Q8N8Q8 333 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 CLHC1Q8NHS4 586 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 B4GALNT2Q8NHY0 566 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 MTERF3Q96E29 417 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 FAM120BQ96EK7 910 aaKnown RBP10.14□□□□□ -0.79
VPS28-214ENST00000531032 SH3YL1Q96HL8 342 aaPredicted RBP10.14□□□□□ -0.79
VPS28-214ENST00000531032 TRMOQ9BU70 441 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 ACTR6Q9GZN1 396 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 TMEM185BQ9H7F4 350 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 DUSP22Q9NRW4 184 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 SIRT3Q9NTG7 399 aaPredicted RBP10.14□□□□□ -0.79
VPS28-214ENST00000531032 ZNF701Q9NV72 531 aaPredicted RBP10.14□□□□□ -0.79
VPS28-214ENST00000531032 FBXO34Q9NWN3 711 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 GIN1Q9NXP7 522 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 BAIAP2L1Q9UHR4 511 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 GPR52Q9Y2T5 361 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 DNAJC15Q9Y5T4 150 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 JMJD1CQ15652 2540 aa10.14□□□□□ -0.79
VPS28-214ENST00000531032 HIVEP2P31629 2446 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 HS3ST1O14792 307 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 SMAD7O15105 426 aaKnown RBP10.13□□□□□ -0.79
VPS28-214ENST00000531032 SLU7O95391 586 aaKnown RBP10.13□□□□□ -0.79
VPS28-214ENST00000531032 CNOT4O95628 575 aaKnown RBP10.13□□□□□ -0.79
VPS28-214ENST00000531032 CHEK2O96017 543 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 TUBBP07437 444 aa10.13□□□□□ -0.79
VPS28-214ENST00000531032 LINC00032P0C843 101 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms