RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 VCPP55072 806 aaKnown RBP6.11□□□□□ -1.43
LSM1-202ENST00000520286 IRX1P78414 480 aaPredicted RBP6.11□□□□□ -1.43
LSM1-202ENST00000520286 CNTN2Q02246 1040 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 CHIT1Q13231 466 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 GPM6BQ13491 265 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 TFDP1Q14186 410 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 PNCKQ6P2M8 343 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 OR5AU1Q8NGC0 362 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 SSC4DQ8WTU2 575 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 ZNF607Q96SK3 696 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 CABLES2Q9BTV7 478 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 PARD6BQ9BYG5 372 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 ELL3Q9HB65 397 aaPredicted RBP6.11□□□□□ -1.43
LSM1-202ENST00000520286 POLD4Q9HCU8 107 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 HYPKQ9NX55 129 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 DUS2Q9NX74 493 aaKnown RBP6.11□□□□□ -1.43
LSM1-202ENST00000520286 USP16Q9Y5T5 823 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 CACNA1FO60840 1977 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 PKD1L3Q7Z443 1732 aa6.11□□□□□ -1.43
LSM1-202ENST00000520286 BCLAF3A2AJT9 711 aaKnown RBP6.1□□□□□ -1.43
LSM1-202ENST00000520286 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.1□□□□□ -1.43
LSM1-202ENST00000520286 NPIPA2E9PIF3 369 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 PDLIM1O00151 329 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 EDIL3O43854 480 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 PDE5AO76074 875 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 KIAA0754O94854 1291 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 UFL1O94874 794 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 IGHG1P01857 330 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 FCGR3AP08637 254 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 IQCF3P0C7M6 154 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 PDHBP11177 359 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 CA8P35219 290 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 NDUFV3P56181 108 aaKnown RBP6.1□□□□□ -1.43
LSM1-202ENST00000520286 KRTAP10-11P60412 298 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 HAND2P61296 217 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 IL9RQ01113 521 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 SPIBQ01892 262 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 CD226Q15762 336 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 CAMK4Q16566 473 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 CCDC152Q4G0S7 254 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 LINC01620Q4KN68 170 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 LRRC23Q53EV4 343 aaPredicted RBP6.1□□□□□ -1.43
LSM1-202ENST00000520286 CEP55Q53EZ4 464 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 BLOC1S2Q6QNY1 142 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 ZNF841Q6ZN19 808 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 TSEN54Q7Z6J9 526 aaKnown RBP6.1□□□□□ -1.43
LSM1-202ENST00000520286 LRRTM1Q86UE6 522 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 FAM133AQ8N9E0 248 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 OR2T3Q8NH03 318 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 OSTF1Q92882 214 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 ADIPOR1Q96A54 375 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 ELMO2Q96JJ3 720 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 CASD1Q96PB1 797 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 ALG12Q9BV10 488 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 ST6GALNAC5Q9BVH7 336 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 DHX33Q9H6R0 707 aaKnown RBP6.1□□□□□ -1.43
LSM1-202ENST00000520286 SCRT2Q9NQ03 307 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 RARRES3Q9UL19 164 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 MGAT4AQ9UM21 535 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 RABL2BQ9UNT1 228 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 DHRS7Q9Y394 339 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 ARFGEF1Q9Y6D6 1849 aa6.1□□□□□ -1.43
LSM1-202ENST00000520286 SBF1O95248 1867 aa6.09□□□□□ -1.43
LSM1-202ENST00000520286 BRCA1P38398 1863 aaKnown RBP6.09□□□□□ -1.43
LSM1-202ENST00000520286 ASB14A6NK59 587 aa6.09□□□□□ -1.43
LSM1-202ENST00000520286 PDHXO00330 501 aa6.09□□□□□ -1.43
LSM1-202ENST00000520286 MTX2O75431 263 aa6.09□□□□□ -1.43
LSM1-202ENST00000520286 RHOBTB1O94844 696 aa6.09□□□□□ -1.43
LSM1-202ENST00000520286 ERLIN2O94905 339 aa6.09□□□□□ -1.43
LSM1-202ENST00000520286 UGT2B4P06133 528 aa6.09□□□□□ -1.43
LSM1-202ENST00000520286 FNTAP49354 379 aa6.09□□□□□ -1.43
LSM1-202ENST00000520286 METAP1P53582 386 aa6.09□□□□□ -1.43
LSM1-202ENST00000520286 OSTNP61366 133 aa6.09□□□□□ -1.43
LSM1-202ENST00000520286 GSTO1P78417 241 aa6.09□□□□□ -1.43
LSM1-202ENST00000520286 MAJINQ3KP22 176 aa6.09□□□□□ -1.43
LSM1-202ENST00000520286 ADAMTSL5Q6ZMM2 481 aa6.09□□□□□ -1.43
LSM1-202ENST00000520286 PNPT1Q8TCS8 783 aaKnown RBP6.09□□□□□ -1.43
LSM1-202ENST00000520286 DNASE2BQ8WZ79 361 aa6.09□□□□□ -1.43
LSM1-202ENST00000520286 ART4Q93070 314 aa6.09□□□□□ -1.43
LSM1-202ENST00000520286 UPRTQ96BW1 309 aa6.09□□□□□ -1.43
LSM1-202ENST00000520286 PRICKLE1Q96MT3 831 aaPredicted RBP6.09□□□□□ -1.43
LSM1-202ENST00000520286 TBC1D10AQ9BXI6 508 aa6.09□□□□□ -1.43
LSM1-202ENST00000520286 ADGRL4Q9HBW9 690 aa6.09□□□□□ -1.43
LSM1-202ENST00000520286 SMPD3Q9NY59 655 aaPredicted RBP6.09□□□□□ -1.43
LSM1-202ENST00000520286 CIDEBQ9UHD4 219 aa6.09□□□□□ -1.43
LSM1-202ENST00000520286 RNF6Q9Y252 685 aa6.09□□□□□ -1.43
LSM1-202ENST00000520286 AUP1Q9Y679 476 aa6.09□□□□□ -1.43
LSM1-202ENST00000520286 LTN1O94822 1766 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 CARMIL3Q8ND23 1372 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 SALL1Q9NSC2 1324 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 A0A087WYN8 130 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 CLDN5O00501 218 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 NTN3O00634 580 aaPredicted RBP6.08□□□□□ -1.44
LSM1-202ENST00000520286 IDH3BO43837 385 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 SORBS2O94875 1100 aaKnown RBP6.08□□□□□ -1.44
LSM1-202ENST00000520286 GCFC2P16383 781 aaKnown RBP6.08□□□□□ -1.44
LSM1-202ENST00000520286 PSMA2P25787 234 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 CHI3L1P36222 383 aaPredicted RBP6.08□□□□□ -1.44
LSM1-202ENST00000520286 EPS15P42566 896 aa6.08□□□□□ -1.44
LSM1-202ENST00000520286 RIDAP52758 137 aaKnown RBP6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms