RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 PRR23D1E9PI22 279 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 MTRF1O75570 445 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 CLEC3AO75596 197 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 C1QCP02747 245 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 PRR23D2P0DMB1 279 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 ADORA3P0DMS8 318 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 OR1E2P47887 323 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 ISL1P61371 349 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 HNRNPA0Q13151 305 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 TRIP6Q15654 476 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 BCL2L15Q5TBC7 163 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 ABHD17CQ6PCB6 329 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 LAS2Q8IYD9 372 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 ATP6V1C2Q8NEY4 427 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 VPS37AQ8NEZ2 397 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 OR1L3Q8NH93 324 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 OR5M11Q96RB7 305 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 REEP1Q9H902 201 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 PNO1Q9NRX1 252 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 MAGEL2Q9UJ55 1249 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 EDARQ9UNE0 448 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 AP1M2Q9Y6Q5 423 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 PRRC2CQ9Y520 2896 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 APC2O95996 2303 aa8.1□□□□□ -1.11
LIMCH1-209ENST00000509277 FABP7O15540 132 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 SCRG1O75711 98 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 SOX14O95416 240 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 PTHP01270 115 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 PRPS2P11908 318 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 CBR1P16152 277 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 ATP5A1P25705 553 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 TLX1P31314 330 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 CRATP43155 626 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 XCR1P46094 333 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 NCBP2P52298 156 aaKnown RBP eCLIP8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 SLC5A12Q1EHB4 618 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 LIPKQ5VXJ0 399 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 TNFAIP8L2Q6P589 184 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 TMEM71Q6P5X7 295 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 LRRC17Q8N6Y2 441 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 SIMC1Q8NDZ2 872 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 CREB3L4Q8TEY5 395 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 MR1Q95460 341 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 VMP1Q96GC9 406 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 QRFPRQ96P65 431 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 MBOAT4Q96T53 435 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 YTHDF1Q9BYJ9 559 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 MED28Q9H204 178 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 METTL15A6NJ78 407 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 YKT6O15498 198 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 SLC2A2P11168 524 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 PTNP21246 168 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF10P21506 573 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 APEX1P27695 318 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 PPP2R1BP30154 601 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 BUD31P41223 144 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 RAE1P78406 368 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 HEPACAMQ14CZ8 416 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 LTB4RQ15722 352 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 NDUFA9Q16795 377 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF385BQ569K4 471 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 KCTD20Q7Z5Y7 419 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 SLC51BQ86UW2 128 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 SRFBP1Q8NEF9 429 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 THAP3Q8WTV1 239 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 FAIM2Q9BWQ8 316 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 SLC6A16Q9GZN6 736 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 AICDAQ9GZX7 198 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF768Q9H5H4 540 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 ADAP2Q9NPF8 381 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 SDR39U1Q9NRG7 319 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 CUTCQ9NTM9 273 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 ZMAT5Q9UDW3 170 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 MLXQ9UH92 298 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 CCDC88CQ9P219 2028 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 A0A1W2PRB8 838 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 CHST10O43529 356 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 TIAF1O95411 115 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 AIFM1O95831 613 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 NR2F6P10588 404 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 CD59P13987 128 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 MAOAP21397 527 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 ATP6V1E1P36543 226 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 CDKN2CP42773 168 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 ITGA1P56199 1179 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 BTG2P78543 158 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF45Q02386 682 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 RUNX2Q13950 521 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 GANABQ14697 944 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 KIAA0040Q15053 153 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 IDO2Q6ZQW0 420 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 KANSL1Q7Z3B3 1105 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 UBE3DQ7Z6J8 389 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 TMEM151BQ8IW70 566 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF614Q8N883 585 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 FLVCR1-AS1Q8TAF5 88 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 SLC22A8Q8TCC7 542 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 PHF10Q8WUB8 498 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 CHTF18Q8WVB6 975 aa8.09□□□□□ -1.11
LIMCH1-209ENST00000509277 MARC2Q969Z3 335 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms