RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 EPCAMP16422 314 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 TCP1P17987 556 aaKnown RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 CD22P20273 847 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 AADACP22760 399 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 CCNE1P24864 410 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 AZGP1P25311 298 aaKnown RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 G0S2P27469 103 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 SHC1P29353 583 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 EEF1DP29692 281 aaKnown RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 PDHA2P29803 388 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 PKLRP30613 574 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 HOXA6P31267 233 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 CASP14P31944 242 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 MC5RP33032 325 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 NUDT1P36639 197 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 LONP1P36776 959 aaKnown RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 VHLP40337 213 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 NPY2RP49146 381 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 RGS7P49802 495 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 KRTAP10-12P60413 245 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 HAND2P61296 217 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 HNRNPKP61978 463 aaKnown RBP eCLIP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 DHODHQ02127 395 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 RBPJQ06330 500 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 SPAG1Q07617 926 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 C17orf67Q0P5P2 114 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 PEX6Q13608 980 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 ITIH4Q14624 930 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 ZMYND11Q15326 602 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 TRIP13Q15645 432 aaPredicted RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 TAB1Q15750 504 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 RBBP7Q16576 425 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 RGS21Q2M5E4 152 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 PARP6Q2NL67 630 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 SNAI3Q3KNW1 292 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 ERMARDQ5T6L9 678 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 C1orf185Q5T7R7 199 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 C12orf60Q5U649 245 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 ANXA8L1Q5VT79 327 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 RESP18Q5W5W9 173 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 DUPD1Q68J44 220 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 CYB5R2Q6BCY4 276 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 PM20D1Q6GTS8 502 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 RAB12Q6IQ22 244 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 SCYL2Q6P3W7 929 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 SUSD1Q6UWL2 747 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 ENPP7Q6UWV6 458 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 MACC1Q6ZN28 852 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 FRRS1Q6ZNA5 592 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 Q6ZRP5 223 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 C11orf57Q6ZUT1 292 aaPredicted RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 SLC24A5Q71RS6 500 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 TAS2R42Q7RTR8 314 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 BBS7Q8IWZ6 715 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 C12orf56Q8IXR9 622 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 CENPSQ8N2Z9 138 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 KLHDC1Q8N7A1 406 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 ATP6V0D2Q8N8Y2 350 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 LEMD2Q8NC56 503 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 KCTD6Q8NC69 237 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 ICA1LQ8NDH6 482 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 Q8NFD4 153 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 OR4D10Q8NGI6 311 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 OR52K1Q8NGK4 314 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 OR4C15Q8NGM1 316 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 OR10Q1Q8NGQ4 319 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 NCOA7Q8NI08 942 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 C9orf43Q8TAL5 461 aaPredicted RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 FBXO30Q8TB52 745 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 URGCPQ8TCY9 931 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 TRAF3IP1Q8TDR0 691 aaPredicted RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 SLC26A7Q8TE54 656 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 CHURC1Q8WUH1 139 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 RASSF5Q8WWW0 418 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 GTF3AQ92664 365 aaKnown RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 KRT35Q92764 455 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 EXT2Q93063 718 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 RAD51AP1Q96B01 352 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 SPSB1Q96BD6 273 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 C11orf24Q96F05 449 aaPredicted RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 RMND5BQ96G75 393 aaPredicted RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 PAGE5Q96GU1 130 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 RADILQ96JH8 1075 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 SLC45A3Q96JT2 553 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 ZIM3Q96PE6 472 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 PPP1R2P1Q96PQ5 205 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 XPO6Q96QU8 1125 aaKnown RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 LGMNQ99538 433 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 MAP3K3Q99759 626 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 SLC29A1Q99808 456 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 CCDC3Q9BQI4 270 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 FERMT1Q9BQL6 677 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 GTPBP2Q9BX10 602 aaKnown RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 BBS2Q9BXC9 721 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 GCOM2Q9BZD3 368 aaPredicted RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 HOXD1Q9GZZ0 328 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 RAB17Q9H0T7 212 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 SDCBP2Q9H190 292 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 CUEDC2Q9H467 287 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 NARFLQ9H6Q4 476 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms