RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 POC1BQ8TC44 478 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 ACTRT2Q8TDY3 377 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 RAB8BQ92930 207 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 ARSGQ96EG1 525 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 CCDC115Q96NT0 180 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 PTGES2Q9H7Z7 377 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 CALHM2Q9HA72 323 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 CLCF1Q9UBD9 225 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 USH1CQ9Y6N9 552 aa16.37■□□□□ 0.21
COL9A3-214ENST00000490398 H3BML4 177 aa16.36■□□□□ 0.21
COL9A3-214ENST00000490398 SCDO00767 359 aa16.36■□□□□ 0.21
COL9A3-214ENST00000490398 DIAPH2O60879 1101 aa16.36■□□□□ 0.21
COL9A3-214ENST00000490398 TNFRSF21O75509 655 aa16.36■□□□□ 0.21
COL9A3-214ENST00000490398 OR12D1P0DN82 309 aa16.36■□□□□ 0.21
COL9A3-214ENST00000490398 UQCRC2P22695 453 aa16.36■□□□□ 0.21
COL9A3-214ENST00000490398 LCN1P31025 176 aa16.36■□□□□ 0.21
COL9A3-214ENST00000490398 ZNF117Q03924 483 aa16.36■□□□□ 0.21
COL9A3-214ENST00000490398 FUT5Q11128 374 aa16.36■□□□□ 0.21
COL9A3-214ENST00000490398 GANABQ14697 944 aaKnown RBP16.36■□□□□ 0.21
COL9A3-214ENST00000490398 FLYWCH1Q4VC44 716 aa16.36■□□□□ 0.21
COL9A3-214ENST00000490398 PDCD4Q53EL6 469 aaKnown RBP16.36■□□□□ 0.21
COL9A3-214ENST00000490398 KLHL26Q53HC5 615 aa16.36■□□□□ 0.21
COL9A3-214ENST00000490398 EPGNQ6UW88 154 aa16.36■□□□□ 0.21
COL9A3-214ENST00000490398 OR9I1Q8NGQ6 314 aa16.36■□□□□ 0.21
COL9A3-214ENST00000490398 C7orf26Q96N11 449 aa16.36■□□□□ 0.21
COL9A3-214ENST00000490398 EBF4Q9BQW3 602 aa16.36■□□□□ 0.21
COL9A3-214ENST00000490398 SLC6A13Q9NSD5 602 aa16.36■□□□□ 0.21
COL9A3-214ENST00000490398 BTNL2Q9UIR0 455 aa16.36■□□□□ 0.21
COL9A3-214ENST00000490398 PCDHGB4Q9UN71 923 aa16.36■□□□□ 0.21
COL9A3-214ENST00000490398 ARHGAP21Q5T5U3 1957 aa16.36■□□□□ 0.21
COL9A3-214ENST00000490398 HCFC1P51610 2035 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 A0A1W2PQD3 144 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 SEC14L5O43304 696 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 IL2RAP01589 272 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 OPN1LWP04000 364 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 PGRP06401 933 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 KRT16P08779 473 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 POU3F2P20265 443 aaPredicted RBP16.35■□□□□ 0.21
COL9A3-214ENST00000490398 IL11P20809 199 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 ATP6V1C1P21283 382 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 PSMA4P25789 261 aaKnown RBP16.35■□□□□ 0.21
COL9A3-214ENST00000490398 ATP12AP54707 1039 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 RCAN2Q14206 197 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 BCL2A1Q16548 175 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 SLC25A35Q3KQZ1 300 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 HMGN2P46Q86SG4 172 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 DMRTC2Q8IXT2 367 aaPredicted RBP16.35■□□□□ 0.21
COL9A3-214ENST00000490398 GCNT2Q8N0V5 402 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 CHDHQ8NE62 594 aaPredicted RBP16.35■□□□□ 0.21
COL9A3-214ENST00000490398 GOT1L1Q8NHS2 421 aaPredicted RBP16.35■□□□□ 0.21
COL9A3-214ENST00000490398 MIPOL1Q8TD10 442 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 LRRC8CQ8TDW0 803 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 SMPDL3BQ92485 455 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 FIG4Q92562 907 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 ZNF845Q96IR2 970 aaPredicted RBP16.35■□□□□ 0.21
COL9A3-214ENST00000490398 SLC35A5Q9BS91 424 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 VIPAS39Q9H9C1 493 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 MED17Q9NVC6 651 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 CARD8Q9Y2G2 431 aa16.35■□□□□ 0.21
COL9A3-214ENST00000490398 FAM47E-STBD1D6RA91 191 aa16.34■□□□□ 0.21
COL9A3-214ENST00000490398 HCRTR2O43614 444 aa16.34■□□□□ 0.21
COL9A3-214ENST00000490398 PEPDP12955 493 aa16.34■□□□□ 0.21
COL9A3-214ENST00000490398 HPGDP15428 266 aa16.34■□□□□ 0.21
COL9A3-214ENST00000490398 CD1EP15812 388 aa16.34■□□□□ 0.21
COL9A3-214ENST00000490398 PPP2R2AP63151 447 aa16.34■□□□□ 0.21
COL9A3-214ENST00000490398 GPR68Q15743 365 aa16.34■□□□□ 0.21
COL9A3-214ENST00000490398 TOMM34Q15785 309 aaPredicted RBP16.34■□□□□ 0.21
COL9A3-214ENST00000490398 MAPK14Q16539 360 aa16.34■□□□□ 0.21
COL9A3-214ENST00000490398 DPY19L1Q2PZI1 675 aa16.34■□□□□ 0.21
COL9A3-214ENST00000490398 PLPPR5Q32ZL2 321 aa16.34■□□□□ 0.21
COL9A3-214ENST00000490398 HEPHL1Q6MZM0 1159 aa16.34■□□□□ 0.21
COL9A3-214ENST00000490398 BHLHB9Q6PI77 547 aa16.34■□□□□ 0.21
COL9A3-214ENST00000490398 GGNQ86UU5 652 aa16.34■□□□□ 0.21
COL9A3-214ENST00000490398 B4GALNT2Q8NHY0 566 aa16.34■□□□□ 0.21
COL9A3-214ENST00000490398 PHOSPHO1Q8TCT1 267 aa16.34■□□□□ 0.21
COL9A3-214ENST00000490398 INTS12Q96CB8 462 aaKnown RBP16.34■□□□□ 0.21
COL9A3-214ENST00000490398 NEURL3Q96EH8 262 aa16.34■□□□□ 0.21
COL9A3-214ENST00000490398 OR52E6Q96RD3 313 aa16.34■□□□□ 0.21
COL9A3-214ENST00000490398 UCN2Q96RP3 112 aa16.34■□□□□ 0.21
COL9A3-214ENST00000490398 SDR39U1Q9NRG7 319 aaPredicted RBP16.34■□□□□ 0.21
COL9A3-214ENST00000490398 ARGLU1Q9NWB6 273 aaPredicted RBP16.34■□□□□ 0.21
COL9A3-214ENST00000490398 MKLN1Q9UL63 735 aa16.34■□□□□ 0.21
COL9A3-214ENST00000490398 POLQO75417 2590 aa16.33■□□□□ 0.21
COL9A3-214ENST00000490398 CCDC154A6NI56 674 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 HMGB1P1B2RPK0 211 aaPredicted RBP16.33■□□□□ 0.2
COL9A3-214ENST00000490398 UBDO15205 165 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 EFNA2O43921 213 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 BCAS1O75363 584 aaPredicted RBP16.33■□□□□ 0.2
COL9A3-214ENST00000490398 SLC22A3O75751 556 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 RCBTB2O95199 551 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 LINGO3P0C6S8 592 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 TMIGD3P0DMS9 266 aaPredicted RBP16.33■□□□□ 0.2
COL9A3-214ENST00000490398 IDO1P14902 403 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 CTSSP25774 331 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 IDH3AP50213 366 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 ARHGAP11BQ3KRB8 267 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 GLYR1Q49A26 553 aaPredicted RBP16.33■□□□□ 0.2
COL9A3-214ENST00000490398 GTDC1Q4AE62 458 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 COX20Q5RI15 118 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 PDZK1Q5T2W1 519 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms