RNA–Protein interactions for RNA: ENST00000487401.1

SREBF1-215, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-215	ENST00000487401	CGA	P01215	116 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	OPN1LW	P04000	364 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	HMGN2	P05204	90 aa	Known RBP	11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	KRT16	P08779	473 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	SLC6A8	P48029	635 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	CCT3	P49368	545 aa	Known RBP	11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	VSNL1	P62760	191 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	RAC1	P63000	192 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	ADAM8	P78325	824 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	EXOC3L2	Q2M3D2	409 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	C6orf136	Q5SQH8	315 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	IL23R	Q5VWK5	629 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	GGN	Q86UU5	652 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	OR56A1	Q8NGH5	318 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	OR10D3	Q8NH80	312 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	OR2V1	Q8NHB1	315 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	PPP1R14C	Q8TAE6	165 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	ADAMTS15	Q8TE58	950 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	TUBGCP3	Q96CW5	907 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	PIK3IP1	Q96FE7	263 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	RNF145	Q96MT1	663 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	STAC	Q99469	402 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	C1orf50	Q9BV19	199 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	ACTRT3	Q9BYD9	372 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	KLHL4	Q9C0H6	718 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	HOXD1	Q9GZZ0	328 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	PIGU	Q9H490	435 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	FANCF	Q9NPI8	374 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	DUSP22	Q9NRW4	184 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	SIRT3	Q9NTG7	399 aa	Predicted RBP	11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	BEX4	Q9NWD9	120 aa	Predicted RBP	11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	FBXO34	Q9NWN3	711 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	GIN1	Q9NXP7	522 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	ZDHHC2	Q9UIJ5	367 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	CLEC4A	Q9UMR7	237 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	HCFC1	P51610	2035 aa		11.18	□□□□□ -0.62
SREBF1-215	ENST00000487401	ZFHX3	Q15911	3703 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	NIN	Q8N4C6	2090 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	NF1	P21359	2839 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401		A0A1W2PQD3	144 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	C7orf72	A4D263	438 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	GTPBP1	O00178	669 aa	Known RBP	11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	CFLAR	O15519	480 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	CXCL13	O43927	109 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	SKAP2	O75563	359 aa	Predicted RBP	11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	BPGM	P07738	259 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	FOSL1	P15407	271 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	CD53	P19397	219 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	PRPS1L1	P21108	318 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	CRYGS	P22914	178 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	EIF1	P41567	113 aa	Known RBP	11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	CARD18	P57730	90 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	TP53BP2	Q13625	1128 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	PTGR1	Q14914	329 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	PLPPR5	Q32ZL2	321 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	XKR7	Q5GH72	579 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	ANKRD34A	Q69YU3	496 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	HBM	Q6B0K9	141 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	GTF2IRD2B	Q6EKJ0	949 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	CDC73	Q6P1J9	531 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	EMB	Q6PCB8	327 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	ESPNL	Q6ZVH7	1005 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	ZNF550	Q7Z398	422 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	GTF2IRD2	Q86UP8	949 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	NUDCD3	Q8IVD9	361 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	ZNF527	Q8NB42	609 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	OR6K3	Q8NGY3	331 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	PHOSPHO1	Q8TCT1	267 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	CDS1	Q92903	461 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	ZC3HAV1L	Q96H79	300 aa	Known RBP	11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	GMPPA	Q96IJ6	420 aa	Predicted RBP	11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	C3orf30	Q96M34	536 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	TMEM185B	Q9H7F4	350 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	TIGAR	Q9NQ88	270 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401	MTOR	P42345	2549 aa		11.17	□□□□□ -0.62
SREBF1-215	ENST00000487401		A0A1W2PPR1	153 aa		11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	TNFSF11	O14788	317 aa		11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	ADAMDEC1	O15204	470 aa		11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	ARHGEF9	O43307	516 aa		11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	NUDT14	O95848	222 aa		11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	C6orf47	O95873	294 aa		11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	PABPC4L	P0CB38	370 aa	Known RBP	11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	NKX6-1	P78426	367 aa	Predicted RBP	11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	MAD2L1	Q13257	205 aa	Predicted RBP	11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	GUSBP1	Q15486	140 aa		11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	CD226	Q15762	336 aa		11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	PGS1	Q32NB8	556 aa		11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	EXOSC6	Q5RKV6	272 aa	Known RBP	11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	BHLHB9	Q6PI77	547 aa		11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	STK32C	Q86UX6	486 aa		11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	LILRA2	Q8N149	483 aa		11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	KRTCAP2	Q8N6L1	136 aa		11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	OSTF1	Q92882	214 aa		11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	MOAP1	Q96BY2	351 aa		11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	COQ8B	Q96D53	544 aa		11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	REXO5	Q96IC2	774 aa	Known RBP	11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	ADGRG7	Q96K78	797 aa		11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	KLHL15	Q96M94	604 aa		11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	BHLHE41	Q9C0J9	482 aa	Predicted RBP	11.16	□□□□□ -0.62
SREBF1-215	ENST00000487401	CXorf36	Q9H7Y0	433 aa		11.16	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms