RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 HDDC2Q7Z4H3 204 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 NANOGNBQ7Z5D8 188 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 ARPINQ7Z6K5 226 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 ZNF410Q86VK4 478 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 CARM1Q86X55 608 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 GIPC3Q8TF64 312 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 SLC35B4Q969S0 331 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 CCDC127Q96BQ5 260 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 RMND5BQ96G75 393 aaPredicted RBP4.73□□□□□ -1.65
USP40-213ENST00000483216 PARK7Q99497 189 aaKnown RBP4.73□□□□□ -1.65
USP40-213ENST00000483216 RPP25Q9BUL9 199 aaKnown RBP4.73□□□□□ -1.65
USP40-213ENST00000483216 MLPHQ9BV36 600 aaPredicted RBP4.73□□□□□ -1.65
USP40-213ENST00000483216 OCR1Q9BZK8 76 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 NEUROG2Q9H2A3 272 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 JPT2Q9H910 190 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 VPS37BQ9H9H4 285 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 GMEB2Q9UKD1 530 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 STX8Q9UNK0 236 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 IFT52Q9Y366 437 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 MYH8P13535 1937 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 BAZ2AQ9UIF9 1905 aaKnown RBP4.73□□□□□ -1.65
USP40-213ENST00000483216 MYH2Q9UKX2 1941 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 CCDC88AQ3V6T2 1871 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 TP53BP1Q12888 1972 aaPredicted RBP4.73□□□□□ -1.65
USP40-213ENST00000483216 KIAA1551Q9HCM1 1747 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 MYH7BA7E2Y1 1941 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 ISPDA4D126 451 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 ANKDD1BA6NHY2 528 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 LRRIQ4A6NIV6 560 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 SAGE2PA6NJ88 616 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 A8MUI8 341 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 TMEM114B3SHH9 223 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 H0YCG3 227 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 GOLGA8MH3BSY2 632 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 GOLGA8RI6L899 631 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 DNALI1O14645 258 aaPredicted RBP4.72□□□□□ -1.65
USP40-213ENST00000483216 TYROBPO43914 113 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 SNAPC5O75971 98 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 ANGPTL1O95841 491 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 SNRPAP09012 282 aaKnown RBP4.72□□□□□ -1.65
USP40-213ENST00000483216 CCDC159P0C7I6 412 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 STMN1P16949 149 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 ITIH1P19827 911 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 IL12AP29459 219 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 CASP1P29466 404 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 STIP1P31948 543 aaKnown RBP4.72□□□□□ -1.65
USP40-213ENST00000483216 FCGR2BP31994 310 aaPredicted RBP4.72□□□□□ -1.65
USP40-213ENST00000483216 FCGR2CP31995 323 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 NSFP46459 744 aaKnown RBP4.72□□□□□ -1.65
USP40-213ENST00000483216 ZFP36L2P47974 494 aaKnown RBP4.72□□□□□ -1.65
USP40-213ENST00000483216 TRPC1P48995 793 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 ATP4BP51164 291 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 BCAP31P51572 246 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 VCPP55072 806 aaKnown RBP4.72□□□□□ -1.65
USP40-213ENST00000483216 NDUFV3P56181 108 aaKnown RBP4.72□□□□□ -1.65
USP40-213ENST00000483216 MYL6P60660 151 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 DYNLL1P63167 89 aaKnown RBP4.72□□□□□ -1.65
USP40-213ENST00000483216 MECOMQ03112 1051 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 STX3Q13277 289 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 ZNF846Q147U1 533 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 TRADDQ15628 312 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 MAPK6Q16659 721 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 TRIM16LQ309B1 348 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 HIGD2BQ4VC39 106 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 ZRANB3Q5FWF4 1079 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 RABGAP1LQ5R372 815 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 SLX4IPQ5VYV7 408 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 PLPP4Q5VZY2 271 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 TTC23LQ6PF05 361 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 UGT2A3Q6UWM9 527 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 CYS1Q717R9 158 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 CATSPER3Q86XQ3 398 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 FBXW8Q8N3Y1 598 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 NHLRC2Q8NBF2 726 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 ZNF564Q8TBZ8 553 aaPredicted RBP4.72□□□□□ -1.65
USP40-213ENST00000483216 ADAMTS16Q8TE57 1224 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 SDR42E1Q8WUS8 393 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 CDKL2Q92772 493 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 TOMM40LQ969M1 308 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 MTMR9Q96QG7 549 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 THTPAQ9BU02 230 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 EHD1Q9H4M9 534 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 RMND5AQ9H871 391 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 RAB20Q9NX57 234 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 NINJ2Q9NZG7 142 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 UBQLN2Q9UHD9 624 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 TSPAN16Q9UKR8 245 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 CDH7Q9ULB5 785 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 CCPG1Q9ULG6 757 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 GPR132Q9UNW8 380 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 TFR2Q9UP52 801 aa4.72□□□□□ -1.65
USP40-213ENST00000483216 TNRC6CQ9HCJ0 1690 aaKnown RBP4.72□□□□□ -1.65
USP40-213ENST00000483216 A8MU76 341 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 SRRM5B3KS81 715 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 SHISA9B4DS77 424 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 AP3B1O00203 1094 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 ST8SIA3O43173 380 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 STAM2O75886 525 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 APOEP02649 317 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 POLR2MP0CAP2 368 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms