RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 ALDH3A1P30838 453 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 CEACAM8P31997 349 aaPredicted RBP6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 PEX19P40855 299 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 PSG6Q00889 435 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 HSPB3Q12988 150 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 RCAN2Q14206 197 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 KIAA0040Q15053 153 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 ZNHIT3Q15649 155 aaPredicted RBP6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 PRSS53Q2L4Q9 553 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 SH2D4BQ5SQS7 431 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 CES4AQ5XG92 561 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 KANK2Q63ZY3 851 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 NSUN5P2Q63ZY6 315 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 EMBQ6PCB8 327 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 AAGABQ6PD74 315 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 ENPP6Q6UWR7 440 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 NPSR1Q6W5P4 371 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 SEM1Q6ZVN7 128 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 YRDCQ86U90 279 aaKnown RBP6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 IFNEQ86WN2 208 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 PLCZ1Q86YW0 608 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 LIX1LQ8IVB5 337 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 OR2L13Q8N349 312 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 BANPQ8N9N5 519 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 WDSUB1Q8N9V3 476 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 TNIP2Q8NFZ5 429 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 ZFP28Q8NHY6 868 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 RNF138Q8WVD3 245 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 EFHD2Q96C19 240 aaPredicted RBP6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 PPCDCQ96CD2 204 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 ELP4Q96EB1 424 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 ZNF764Q96H86 408 aaPredicted RBP6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 WDYHV1Q96HA8 205 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 AMDHD1Q96NU7 426 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 FAM111AQ96PZ2 611 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 TRIB1Q96RU8 372 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 CCT7Q99832 543 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 ZNF559Q9BR84 538 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 GATA5Q9BWX5 397 aaPredicted RBP6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 UGT2B28Q9BY64 529 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 ROPN1BQ9BZX4 212 aaPredicted RBP6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 OR2B2Q9GZK3 357 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 GLIPR2Q9H4G4 154 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 CALHM2Q9HA72 323 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 ROPN1Q9HAT0 212 aaPredicted RBP6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 EML4Q9HC35 981 aaKnown RBP6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 Q9N2J8 555 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 TAS2R10Q9NYW0 307 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 LGALS13Q9UHV8 139 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 DKKL1Q9UK85 242 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 MRTO4Q9UKD2 239 aaKnown RBP6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 CBLCQ9ULV8 474 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 C19orf53Q9UNZ5 99 aaPredicted RBP6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 TMED5Q9Y3A6 229 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 FIS1Q9Y3D6 152 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 PTGDR2Q9Y5Y4 395 aa6.17□□□□□ -1.42
CCDC88A-213ENST00000476903 MBD3L4A6NDZ8 208 aaPredicted RBP6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 MBD3L3A6NE82 208 aaPredicted RBP6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 MBD3L5A6NJ08 208 aaPredicted RBP6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 CD8B2A6NJW9 211 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 H0Y3Z8 333 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 LSM1O15116 133 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 PDPK1O15530 556 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 SPAG7O75391 227 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 NME6O75414 186 aaPredicted RBP6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 PSMG1O95456 288 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 CHRNGP07510 517 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 FGF4P08620 206 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 LINC00032P0C843 101 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 CYP4B1P13584 511 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 CPN1P15169 458 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 DDX5P17844 614 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 SDC1P18827 310 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 BMP5P22003 454 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 SRD5A2P31213 254 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 EVI2BP34910 448 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 SERPINB5P36952 375 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 ASMTP46597 345 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 CLK3P49761 638 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 ASCL1P50553 236 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 GAS1P54826 345 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 PSMD4P55036 377 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 WNT3P56703 355 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 RPL38P63173 70 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 MYBPHQ13203 477 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 GANABQ14697 944 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 DECR1Q16698 335 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 CR1LQ2VPA4 569 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 ARL13AQ5H913 290 aaPredicted RBP6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 DCST1Q5T197 706 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 IGFL4Q6B9Z1 124 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 OR5M10Q6IEU7 315 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 ANKRD26P1Q6NSI1 321 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 WDR93Q6P2C0 686 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 Q6ZSR9 355 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 ZNF575Q86XF7 245 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 DDIASQ8IXT1 998 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 RELL2Q8NC24 303 aaPredicted RBP6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 NAXEQ8NCW5 288 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 OR4K17Q8NGC6 315 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms