RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 EMC3Q9P0I2 261 aa6.97□□□□□ -1.29
USP54-211ENST00000474929 PAK5Q9P286 719 aa6.97□□□□□ -1.29
USP54-211ENST00000474929 MRTO4Q9UKD2 239 aaKnown RBP6.97□□□□□ -1.29
USP54-211ENST00000474929 WNK2Q9Y3S1 2297 aa6.97□□□□□ -1.29
USP54-211ENST00000474929 COL7A1Q02388 2944 aa6.97□□□□□ -1.29
USP54-211ENST00000474929 PPIAL4EA0A075B759 164 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 IGLV3-32A0A0A0MS00 114 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 PPIAL4CA0A0B4J2A2 164 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 A0A1B0GTH6 734 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 ZNF724A8MTY0 619 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 PPIAL4DF5H284 164 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 CCDC188H7C350 402 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 hCG_2039718K7EN88 272 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 KIF2AO00139 706 aaPredicted RBP6.96□□□□□ -1.3
USP54-211ENST00000474929 RTCAO00442 366 aaKnown RBP6.96□□□□□ -1.3
USP54-211ENST00000474929 PIP5K1BO14986 540 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 CBX7O95931 251 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 ATP1B1P05026 303 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 CT62P0C5K7 136 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 PPIAL4FP0DN26 164 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 PORP16435 677 aaPredicted RBP6.96□□□□□ -1.3
USP54-211ENST00000474929 OMGP23515 440 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 SLC1A2P43004 574 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 ZNF41P51814 821 aaPredicted RBP6.96□□□□□ -1.3
USP54-211ENST00000474929 PSMD4P55036 377 aaKnown RBP6.96□□□□□ -1.3
USP54-211ENST00000474929 RWDD2BP57060 319 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 CRADDP78560 199 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 CD69Q07108 199 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 C17orf67Q0P5P2 114 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 STX5Q13190 355 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 PDAP1Q13442 181 aaKnown RBP6.96□□□□□ -1.3
USP54-211ENST00000474929 DHX34Q14147 1143 aaKnown RBP6.96□□□□□ -1.3
USP54-211ENST00000474929 ADRM1Q16186 407 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 CCNG2Q16589 344 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 ANKRD22Q5VYY1 191 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 FBXW9Q5XUX1 488 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 C4orf22Q6V702 233 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 FRA10AC1Q70Z53 315 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 TCAIMQ8N3R3 496 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 CEP112Q8N8E3 955 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 ZNF473Q8WTR7 871 aaKnown RBP6.96□□□□□ -1.3
USP54-211ENST00000474929 RDH5Q92781 318 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 ARL5BQ96KC2 179 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 SERPINB12Q96P63 405 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 GOLPH3Q9H4A6 298 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 OBP2BQ9NPH6 170 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 ASB6Q9NWX5 421 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 FAM120CQ9NX05 1096 aaKnown RBP6.96□□□□□ -1.3
USP54-211ENST00000474929 MED11Q9P086 117 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 IFNKQ9P0W0 207 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 ASH2LQ9UBL3 628 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 PRSS50Q9UI38 385 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 GPR55Q9Y2T6 319 aaPredicted RBP6.96□□□□□ -1.3
USP54-211ENST00000474929 PLLPQ9Y342 182 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 RNF114Q9Y508 228 aa6.96□□□□□ -1.3
USP54-211ENST00000474929 LCE6AA0A183 80 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 DHHO43323 396 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 NTN1O95631 604 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 PPP1R3DO95685 299 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 IFNB1P01574 187 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 CPMP14384 443 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 EIF1P41567 113 aaKnown RBP6.95□□□□□ -1.3
USP54-211ENST00000474929 CASP2P42575 452 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 MARCKSL1P49006 195 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 NAP1L1P55209 391 aaKnown RBP6.95□□□□□ -1.3
USP54-211ENST00000474929 PRPS1P60891 318 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 LMO4P61968 165 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 CDK16Q00536 496 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 DUSP2Q05923 314 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 TBCCQ15814 346 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 ERCC6LQ2NKX8 1250 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 GALNT18Q6P9A2 607 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 PAQR3Q6TCH7 311 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 GALNT5Q7Z7M9 940 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 ADAMTSL2Q86TH1 951 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 RETREG3Q86VR2 466 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 NUDT13Q86X67 352 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 UBE2J2Q8N2K1 259 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 RIBC1Q8N443 379 aaPredicted RBP6.95□□□□□ -1.3
USP54-211ENST00000474929 CDYL2Q8N8U2 506 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 CCDC89Q8N998 374 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 NUP37Q8NFH4 326 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 SLC35B2Q8TB61 432 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 CALR3Q96L12 384 aaKnown RBP6.95□□□□□ -1.3
USP54-211ENST00000474929 MUS81Q96NY9 551 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 SYT3Q9BQG1 590 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 FRMD8P1Q9BZ68 369 aaPredicted RBP6.95□□□□□ -1.3
USP54-211ENST00000474929 MS4A7Q9GZW8 240 aaPredicted RBP6.95□□□□□ -1.3
USP54-211ENST00000474929 MS4A5Q9H3V2 200 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 MALT1Q9UDY8 824 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 DCTN4Q9UJW0 460 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 FBXO5Q9UKT4 447 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 VDAC3Q9Y277 283 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 OR10H1Q9Y4A9 318 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 PLXNB1O43157 2135 aa6.95□□□□□ -1.3
USP54-211ENST00000474929 A0A0J9YW62 118 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 MAGEB16A2A368 324 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 GLOD5A6NK44 160 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 B4DXG7 233 aa6.94□□□□□ -1.3
USP54-211ENST00000474929 PPIHO43447 177 aaKnown RBP6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms