RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 SLC17A6Q9P2U8 582 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 SLC45A1Q9Y2W3 748 aa12.6□□□□□ -0.39
COL6A3-209ENST00000472056 A8MVM7 634 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 SYT7O43581 403 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 FDXRP22570 491 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 PRPH2P23942 346 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 CNR2P34972 360 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 RPL22L1Q6P5R6 122 aaKnown RBP12.59□□□□□ -0.39
COL6A3-209ENST00000472056 LBX2Q6XYB7 198 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 C2orf73Q8N5S3 287 aaPredicted RBP12.59□□□□□ -0.39
COL6A3-209ENST00000472056 ANKRD53Q8N9V6 530 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 GCDHQ92947 438 aaPredicted RBP12.59□□□□□ -0.39
COL6A3-209ENST00000472056 CARS2Q9HA77 564 aaKnown RBP12.59□□□□□ -0.39
COL6A3-209ENST00000472056 APOBEC3GQ9HC16 384 aaKnown RBP12.59□□□□□ -0.39
COL6A3-209ENST00000472056 PLEKHJ1Q9NW61 149 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 OR6C2Q9NZP2 312 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 ARNTLO00327 626 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 TAAR5O14804 337 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 OR2T1O43869 369 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 POP7O75817 140 aaKnown RBP12.59□□□□□ -0.39
COL6A3-209ENST00000472056 MT-ND4LP03901 98 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 ACP2P11117 423 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 CALCRP30988 508 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 TPMTP51580 245 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 H3F3AP84243 136 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 C4orf17Q53FE4 359 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 ZC3H14Q6PJT7 736 aaKnown RBP12.59□□□□□ -0.39
COL6A3-209ENST00000472056 SBSNQ6UWP8 590 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 ASPGQ86U10 573 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 NKAIN3Q8N8D7 197 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 LDAHQ9H6V9 325 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 MOB1AQ9H8S9 216 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 MAN2C1Q9NTJ4 1040 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 AP1G1O43747 822 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 SPI1P17947 270 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 WDR5P61964 334 aaKnown RBP12.59□□□□□ -0.39
COL6A3-209ENST00000472056 ZNF805Q5CZA5 627 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.59□□□□□ -0.39
COL6A3-209ENST00000472056 SLC22A8Q8TCC7 542 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 PAQR8Q8TEZ7 354 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 ZBTB8AQ96BR9 441 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 NOX3Q9HBY0 568 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 PPP1R14DQ9NXH3 145 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 S100A11P31949 105 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 OR4K1Q8NGD4 311 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 FRS2Q8WU20 508 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 ECHDC3Q96DC8 303 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 PHIPQ8WWQ0 1821 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 RAB1AP62820 205 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 FAM205BPQ63HN1 556 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 OR10K2Q6IF99 312 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 DPPA2Q7Z7J5 298 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 OR5L1Q8NGL2 311 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 ANGPTL6Q8NI99 470 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 A0A0A6YYH2 397 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 A6NJ64 397 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 KITLGP21583 273 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 GIFP27352 417 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 CDKN1CP49918 316 aaPredicted RBP12.59□□□□□ -0.39
COL6A3-209ENST00000472056 DIO3P55073 304 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 LRIT3Q3SXY7 679 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 C3orf38Q5JPI3 329 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 SLX4IPQ5VYV7 408 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 ABHD5Q8WTS1 349 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 ARMC5Q96C12 935 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 FZD3Q9NPG1 666 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 FADS1O60427 444 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 SYNPRQ8TBG9 265 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 FAM46AQ96IP4 442 aaKnown RBP12.59□□□□□ -0.39
COL6A3-209ENST00000472056 FGFBP2Q9BYJ0 223 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 ALKBH4Q9NXW9 302 aa12.59□□□□□ -0.39
COL6A3-209ENST00000472056 RPS10-NUDT3A0A1W2PQS6 291 aa12.58□□□□□ -0.39
COL6A3-209ENST00000472056 SCG5P05408 212 aa12.58□□□□□ -0.39
COL6A3-209ENST00000472056 RPS10P46783 165 aaKnown RBP12.58□□□□□ -0.39
COL6A3-209ENST00000472056 SOX2P48431 317 aa12.58□□□□□ -0.39
COL6A3-209ENST00000472056 EOGTQ5NDL2 527 aa12.58□□□□□ -0.39
COL6A3-209ENST00000472056 SHDQ96IW2 340 aa12.58□□□□□ -0.39
COL6A3-209ENST00000472056 GPR39O43194 453 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 TXNL1O43396 289 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 BRINP1O60477 761 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 FKTNO75072 461 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 DDOSTP39656 456 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 RNF144AP50876 292 aaPredicted RBP12.58□□□□□ -0.4
COL6A3-209ENST00000472056 PCBD1P61457 104 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 RNF151Q2KHN1 245 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 PDZD3Q86UT5 571 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 ZNF454Q8N9F8 522 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 SLAMF9Q96A28 289 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 RNF208Q9H0X6 261 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 CCL22O00626 93 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 MRPL3P09001 348 aaKnown RBP12.58□□□□□ -0.4
COL6A3-209ENST00000472056 SNRPD2P62316 118 aaKnown RBP12.58□□□□□ -0.4
COL6A3-209ENST00000472056 EEF1A2Q05639 463 aaKnown RBP12.58□□□□□ -0.4
COL6A3-209ENST00000472056 TANGO2Q6ICL3 276 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 GIMAP1Q8WWP7 306 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 TMEM82A0PJX8 343 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 MSTNO14793 375 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 PMS2P2O95744 297 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 ELAVL3Q14576 367 aaKnown RBP12.58□□□□□ -0.4
COL6A3-209ENST00000472056 LRFN4Q6PJG9 635 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms