RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 DYRK1AQ13627 763 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 EXOSC7Q15024 291 aaKnown RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 TRMT5Q32P41 509 aaKnown RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 DNAL1Q4LDG9 190 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 SFT2D3Q587I9 215 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 TNFAIP8L2Q6P589 184 aaPredicted RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 MSANTD1Q6ZTZ1 278 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 LANCL3Q6ZV70 420 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 WDR53Q7Z5U6 358 aaPredicted RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 CAMKMTQ7Z624 323 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 YTHDF3Q7Z739 585 aaKnown RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 RNF130Q86XS8 419 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 HPS6Q86YV9 775 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 MSRB3Q8IXL7 192 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 SLC15A3Q8IY34 581 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 SAMD14Q8IZD0 417 aaPredicted RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 ADGRG5Q8IZF4 528 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 PGAM4Q8N0Y7 254 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 ARHGAP24Q8N264 748 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 DPP10Q8N608 796 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 ESX1Q8N693 406 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 TRIML2Q8N7C3 387 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 ZNF321PQ8N8H1 164 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 ENDOVQ8N8Q3 282 aaKnown RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 SIMC1Q8NDZ2 872 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 PLPP5Q8NEB5 264 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 OR7G2Q8NG99 324 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 OR52R1Q8NGF1 315 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 OR10A6Q8NH74 314 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 SUN3Q8TAQ9 357 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 FBXO30Q8TB52 745 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 ADAMTS18Q8TE60 1221 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 CT55Q8WUE5 264 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 XAGE5Q8WWM1 108 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 SLC9A6Q92581 669 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 RAB8BQ92930 207 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 RIT1Q92963 219 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 ROPN1LQ96C74 230 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 C8orf44Q96CB5 159 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 CCDC124Q96CT7 223 aaKnown RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 NMD3Q96D46 503 aaKnown RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 FAM122AQ96E09 287 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 ELP4Q96EB1 424 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 SLC35G5Q96KT7 338 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 ZNF681Q96N22 645 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 CCDC115Q96NT0 180 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 SLC46A1Q96NT5 459 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 ANKRD27Q96NW4 1050 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 RAB3IPQ96QF0 476 aaPredicted RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 OR1F2PQ96R84 312 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 SH3GL1Q99961 368 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 MESP1Q9BRJ9 268 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 ZPBPQ9BS86 351 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 CRB3Q9BUF7 120 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 DDA1Q9BW61 102 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 OR8D2Q9GZM6 311 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 VN1R1Q9GZP7 353 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 PCDHAC1Q9H158 963 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 UNKLQ9H9P5 680 aaKnown RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 POLR1BQ9H9Y6 1135 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 LIN28AQ9H9Z2 209 aaKnown RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 SMURF2Q9HAU4 748 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 TPT1P8Q9HAU6 139 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 SERHLQ9NQF3 203 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 ACSS1Q9NUB1 689 aaPredicted RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 ZCCHC3Q9NUD5 404 aaKnown RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 DDX18Q9NVP1 670 aaKnown RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 NDE1Q9NXR1 346 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 TAS2R7Q9NYW3 318 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 SLC25A37Q9NYZ2 338 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 EHD3Q9NZN3 535 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 FAF1Q9UNN5 650 aaPredicted RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 USP22Q9UPT9 525 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 ERVK-19Q9WJR5 959 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 MAN2B2Q9Y2E5 1009 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 MMACHCQ9Y4U1 282 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 MRPS18BQ9Y676 258 aaKnown RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 CLCA3PQ9Y6N3 262 aa3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 COL5A1P20908 1838 aaPredicted RBP3.78□□□□□ -1.8
TMEM39A-204ENST00000468545 EP300Q09472 2414 aaPredicted RBP3.78□□□□□ -1.81
TMEM39A-204ENST00000468545 OTOGLQ3ZCN5 2332 aa3.77□□□□□ -1.81
TMEM39A-204ENST00000468545 CROCCQ5TZA2 2017 aa3.77□□□□□ -1.81
TMEM39A-204ENST00000468545 LOC101059948A0A1B0GTJ6 334 aa3.77□□□□□ -1.81
TMEM39A-204ENST00000468545 VSTM2BA6NLU5 285 aa3.77□□□□□ -1.81
TMEM39A-204ENST00000468545 A8MUI8 341 aa3.77□□□□□ -1.81
TMEM39A-204ENST00000468545 C5orf58C9J3I9 102 aa3.77□□□□□ -1.81
TMEM39A-204ENST00000468545 H0YHG0 523 aa3.77□□□□□ -1.81
TMEM39A-204ENST00000468545 STMND1H3BQB6 276 aa3.77□□□□□ -1.81
TMEM39A-204ENST00000468545 MASP2O00187 686 aa3.77□□□□□ -1.81
TMEM39A-204ENST00000468545 UPK1AO00322 258 aa3.77□□□□□ -1.81
TMEM39A-204ENST00000468545 NME4O00746 187 aa3.77□□□□□ -1.81
TMEM39A-204ENST00000468545 SLC28A2O43868 658 aa3.77□□□□□ -1.81
TMEM39A-204ENST00000468545 GMNNO75496 209 aa3.77□□□□□ -1.81
TMEM39A-204ENST00000468545 STAMBPO95630 424 aa3.77□□□□□ -1.81
TMEM39A-204ENST00000468545 NPPAP01160 153 aa3.77□□□□□ -1.81
TMEM39A-204ENST00000468545 HMGN2P05204 90 aaKnown RBP3.77□□□□□ -1.81
TMEM39A-204ENST00000468545 ALOX5P09917 674 aa3.77□□□□□ -1.81
TMEM39A-204ENST00000468545 ETFAP13804 333 aa3.77□□□□□ -1.81
TMEM39A-204ENST00000468545 ME2P23368 584 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms