RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 FBXO30Q8TB52 745 aa13.78□□□□□ -0.2
SKA3-204ENST00000462482 OSTF1Q92882 214 aa13.78□□□□□ -0.2
SKA3-204ENST00000462482 CIDECQ96AQ7 238 aaPredicted RBP13.78□□□□□ -0.2
SKA3-204ENST00000462482 MTERF3Q96E29 417 aa13.78□□□□□ -0.2
SKA3-204ENST00000462482 RNF145Q96MT1 663 aa13.78□□□□□ -0.2
SKA3-204ENST00000462482 TSSK3Q96PN8 268 aa13.78□□□□□ -0.2
SKA3-204ENST00000462482 TRMOQ9BU70 441 aa13.78□□□□□ -0.2
SKA3-204ENST00000462482 ACTR6Q9GZN1 396 aa13.78□□□□□ -0.2
SKA3-204ENST00000462482 OR10A4Q9H209 315 aa13.78□□□□□ -0.2
SKA3-204ENST00000462482 TMEM185BQ9H7F4 350 aa13.78□□□□□ -0.2
SKA3-204ENST00000462482 PPCSQ9HAB8 311 aa13.78□□□□□ -0.2
SKA3-204ENST00000462482 NGBQ9NPG2 151 aa13.78□□□□□ -0.2
SKA3-204ENST00000462482 OXSMQ9NWU1 459 aa13.78□□□□□ -0.2
SKA3-204ENST00000462482 TMED5Q9Y3A6 229 aa13.78□□□□□ -0.2
SKA3-204ENST00000462482 GJE1A6NN92 205 aa13.77□□□□□ -0.21
SKA3-204ENST00000462482 NPIPB8E9PQR5 432 aa13.77□□□□□ -0.21
SKA3-204ENST00000462482 H3BNH8 94 aa13.77□□□□□ -0.21
SKA3-204ENST00000462482 ADAMDEC1O15204 470 aa13.77□□□□□ -0.21
SKA3-204ENST00000462482 KCNK2O95069 426 aa13.77□□□□□ -0.21
SKA3-204ENST00000462482 CNOT4O95628 575 aaKnown RBP13.77□□□□□ -0.21
SKA3-204ENST00000462482 NUDT14O95848 222 aa13.77□□□□□ -0.21
SKA3-204ENST00000462482 THBDP07204 575 aa13.77□□□□□ -0.21
SKA3-204ENST00000462482 FREM3P0C091 2139 aa13.77□□□□□ -0.21
SKA3-204ENST00000462482 CRHR1P34998 444 aa13.77□□□□□ -0.21
SKA3-204ENST00000462482 RPL3P39023 403 aaKnown RBP13.77□□□□□ -0.21
SKA3-204ENST00000462482 RPL38P63173 70 aaKnown RBP13.77□□□□□ -0.21
SKA3-204ENST00000462482 POU6F2P78424 691 aaPredicted RBP13.77□□□□□ -0.21
SKA3-204ENST00000462482 KIAA0040Q15053 153 aa13.77□□□□□ -0.21
SKA3-204ENST00000462482 PLPPR5Q32ZL2 321 aa13.77□□□□□ -0.21
SKA3-204ENST00000462482 TMEM201Q5SNT2 666 aa13.77□□□□□ -0.21
SKA3-204ENST00000462482 MFSD12Q6NUT3 480 aa13.77□□□□□ -0.21
SKA3-204ENST00000462482 SLC16A11Q8NCK7 471 aa13.77□□□□□ -0.21
SKA3-204ENST00000462482 EXPH5Q8NEV8 1989 aa13.77□□□□□ -0.21
SKA3-204ENST00000462482 KIF18AQ8NI77 898 aa13.77□□□□□ -0.21
SKA3-204ENST00000462482 MZB1Q8WU39 189 aa13.77□□□□□ -0.21
SKA3-204ENST00000462482 HOXB13Q92826 284 aaPredicted RBP13.77□□□□□ -0.21
SKA3-204ENST00000462482 PLPPR2Q96GM1 343 aa13.77□□□□□ -0.21
SKA3-204ENST00000462482 KLHL15Q96M94 604 aa13.77□□□□□ -0.21
SKA3-204ENST00000462482 HDHD5Q9BXW7 423 aa13.77□□□□□ -0.21
SKA3-204ENST00000462482 C12orf49Q9H741 205 aa13.77□□□□□ -0.21
SKA3-204ENST00000462482 MPDZO75970 2070 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 A0A1W2PQD3 144 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 TMEM114B3SHH9 223 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 HS3ST1O14792 307 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 KLF4O43474 513 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 FAM153BP0C7A2 387 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 ACP2P11117 423 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 SDC1P18827 310 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 PSMB1P20618 241 aaKnown RBP13.76□□□□□ -0.21
SKA3-204ENST00000462482 LOXP28300 417 aaPredicted RBP13.76□□□□□ -0.21
SKA3-204ENST00000462482 MAPK1P28482 360 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 HPCAL1P37235 193 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 MAP3K8P41279 467 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 ATP5J2P56134 94 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 RNPS1Q15287 305 aaKnown RBP13.76□□□□□ -0.21
SKA3-204ENST00000462482 DUSP5Q16690 384 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 FAM153CQ494X1 144 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 GALNTL6Q49A17 601 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 LRIG3Q6UXM1 1119 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 TRABD2AQ86V40 505 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 DDIASQ8IXT1 998 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 LILRA2Q8N149 483 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 ZNF611Q8N823 705 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 LRRN4CLQ8ND94 238 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 CLHC1Q8NHS4 586 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 PPP1R14CQ8TAE6 165 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 FAM110BQ8TC76 370 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 CPNE4Q96A23 557 aaPredicted RBP13.76□□□□□ -0.21
SKA3-204ENST00000462482 ARL8AQ96BM9 186 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 ADGRG7Q96K78 797 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 RHOXF2Q9BQY4 288 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 BTBD2Q9BX70 525 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 HOXD1Q9GZZ0 328 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 ZCCHC3Q9NUD5 404 aaKnown RBP13.76□□□□□ -0.21
SKA3-204ENST00000462482 NTMQ9P121 344 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 CCL27Q9Y4X3 112 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 MED12Q93074 2177 aa13.76□□□□□ -0.21
SKA3-204ENST00000462482 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.75□□□□□ -0.21
SKA3-204ENST00000462482 A0A0J9YW62 118 aa13.75□□□□□ -0.21
SKA3-204ENST00000462482 SMIM23A6NLE4 172 aa13.75□□□□□ -0.21
SKA3-204ENST00000462482 GTPBP1O00178 669 aaKnown RBP13.75□□□□□ -0.21
SKA3-204ENST00000462482 SOX30O94993 753 aa13.75□□□□□ -0.21
SKA3-204ENST00000462482 KRT16P08779 473 aa13.75□□□□□ -0.21
SKA3-204ENST00000462482 LINC00032P0C843 101 aa13.75□□□□□ -0.21
SKA3-204ENST00000462482 IL32P24001 234 aa13.75□□□□□ -0.21
SKA3-204ENST00000462482 ELK4P28324 431 aa13.75□□□□□ -0.21
SKA3-204ENST00000462482 AGTR1P30556 359 aa13.75□□□□□ -0.21
SKA3-204ENST00000462482 SFTPDP35247 375 aa13.75□□□□□ -0.21
SKA3-204ENST00000462482 CTU2Q2VPK5 515 aaKnown RBP13.75□□□□□ -0.21
SKA3-204ENST00000462482 SPDYE7PQ495Y7 208 aa13.75□□□□□ -0.21
SKA3-204ENST00000462482 ZNF385BQ569K4 471 aa13.75□□□□□ -0.21
SKA3-204ENST00000462482 C22orf34Q6ZV56 151 aa13.75□□□□□ -0.21
SKA3-204ENST00000462482 MTERF4Q7Z6M4 381 aaKnown RBP13.75□□□□□ -0.21
SKA3-204ENST00000462482 PHOSPHO1Q8TCT1 267 aa13.75□□□□□ -0.21
SKA3-204ENST00000462482 UBLCP1Q8WVY7 318 aaPredicted RBP13.75□□□□□ -0.21
SKA3-204ENST00000462482 GIMAP5Q96F15 307 aa13.75□□□□□ -0.21
SKA3-204ENST00000462482 TRMT61AQ96FX7 289 aaKnown RBP13.75□□□□□ -0.21
SKA3-204ENST00000462482 C16orf58Q96GQ5 468 aa13.75□□□□□ -0.21
SKA3-204ENST00000462482 STACQ99469 402 aa13.75□□□□□ -0.21
SKA3-204ENST00000462482 TNFRSF12AQ9NP84 129 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms