RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 FRMD1Q8N878 549 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 SIDT2Q8NBJ9 832 aaKnown RBP12.56□□□□□ -0.4
USP40-208ENST00000450966 LINC01599Q8WXQ3 324 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 CDK15Q96Q40 435 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 ADAM19Q9H013 955 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 MRM3Q9HC36 420 aaKnown RBP12.56□□□□□ -0.4
USP40-208ENST00000450966 MAN2C1Q9NTJ4 1040 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 GALPQ9UBC7 116 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 DUXAA6NLW8 204 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 LGALS8O00214 317 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 MANBAO00462 879 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 BCHEP06276 602 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 GALTP07902 379 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 SLC6A6P31641 620 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 BMP8BP34820 402 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 UBE2IP63279 158 aaKnown RBP12.56□□□□□ -0.4
USP40-208ENST00000450966 GRB7Q14451 532 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 BMP8AQ7Z5Y6 402 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 ZNF619Q8N2I2 560 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 KIAA1191Q96A73 305 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 SMOC2Q9H3U7 446 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 IQCF5A8MTL0 148 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 NRLP54845 237 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 CLDN20P56880 219 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 PSPHP78330 225 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 C9orf152Q5JTZ5 239 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 SPIN3Q5JUX0 258 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 AMZ2Q86W34 360 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 FAM58AQ8N1B3 248 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 SFT2D1Q8WV19 159 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 ESAMQ96AP7 390 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 RNF170Q96K19 258 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 FCRL5Q96RD9 977 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 APOA2P02652 100 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 VIPR1P32241 457 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 PYCR1P32322 319 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 SOWAHAQ2M3V2 549 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 APOOLQ6UXV4 268 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 DTWD1Q8N5C7 304 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 SLC5A8Q8N695 610 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 TANKQ92844 425 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 DDOQ99489 341 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 SLC32A1Q9H598 525 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 THSD1Q9NS62 852 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 GIMAP2Q9UG22 337 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 WASF3Q9UPY6 502 aa12.56□□□□□ -0.4
USP40-208ENST00000450966 FAM155AB1AL88 458 aaPredicted RBP12.55□□□□□ -0.4
USP40-208ENST00000450966 PEX12O00623 359 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 ANKRD28O15084 1053 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 HCRTR2O43614 444 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 NIPSNAP2O75323 286 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 ZNF217O75362 1048 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 OR2F2O95006 317 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 AGR2O95994 175 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 ZNF865P0CJ78 1059 aaPredicted RBP12.55□□□□□ -0.4
USP40-208ENST00000450966 APEX1P27695 318 aaKnown RBP12.55□□□□□ -0.4
USP40-208ENST00000450966 CST5P28325 142 aaPredicted RBP12.55□□□□□ -0.4
USP40-208ENST00000450966 HMGCLP35914 325 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 ASPAP45381 313 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 OR2F1Q13607 317 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 EIF2B1Q14232 305 aaKnown RBP12.55□□□□□ -0.4
USP40-208ENST00000450966 MICAQ29983 383 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 BEX5Q5H9J7 111 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 AWAT2Q6E213 333 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 NDUFAF7Q7L592 441 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 SLC29A4Q7RTT9 530 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 TMEM150AQ86TG1 271 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 C1orf52Q8N6N3 182 aaKnown RBP12.55□□□□□ -0.4
USP40-208ENST00000450966 ZNF382Q96SR6 550 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 C21orf33P30042 268 aaPredicted RBP12.55□□□□□ -0.4
USP40-208ENST00000450966 SLAMF1Q13291 335 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 GAS6Q14393 721 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 RBM39Q14498 530 aaKnown RBP12.55□□□□□ -0.4
USP40-208ENST00000450966 MOGAT2Q3SYC2 334 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 DPY19L4Q7Z388 723 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 FBXL6Q8N531 539 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 CMTM3Q96MX0 182 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 PTDSS2Q9BVG9 487 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 SPATA6Q9NWH7 488 aaPredicted RBP12.55□□□□□ -0.4
USP40-208ENST00000450966 KCMF1Q9P0J7 381 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 C19orf25Q9UFG5 118 aaPredicted RBP12.55□□□□□ -0.4
USP40-208ENST00000450966 SLC23A1Q9UHI7 598 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 DKKL1Q9UK85 242 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 RCE1Q9Y256 329 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 TRBV2A0A0J9YWF9 115 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 OR2A25A4D2G3 310 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 ARHGAP33O14559 1287 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 SCG5P05408 212 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 EBLN1P0CF75 366 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 HOXB1P14653 301 aaPredicted RBP12.55□□□□□ -0.4
USP40-208ENST00000450966 RAB40BQ12829 278 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 COL9A3Q14050 684 aaPredicted RBP12.55□□□□□ -0.4
USP40-208ENST00000450966 MFSD13AQ14CX5 517 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 ABRAXAS2Q15018 415 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 C2orf76Q3KRA6 126 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 LPCAT3Q6P1A2 487 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 DHRS4Q9BTZ2 278 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 NKX2-4Q9H2Z4 354 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 GKN1Q9NS71 199 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 SCML1Q9UN30 329 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms