RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 ATAD3BQ5T9A4 648 aa13.22□□□□□ -0.29
USP39-206ENST00000448971 SAXO2Q658L1 398 aa13.22□□□□□ -0.29
USP39-206ENST00000448971 AAGABQ6PD74 315 aa13.22□□□□□ -0.29
USP39-206ENST00000448971 B3GNT6Q6ZMB0 384 aa13.22□□□□□ -0.29
USP39-206ENST00000448971 ZNF621Q6ZSS3 439 aa13.22□□□□□ -0.29
USP39-206ENST00000448971 PM20D2Q8IYS1 436 aa13.22□□□□□ -0.29
USP39-206ENST00000448971 FADS6Q8N9I5 356 aa13.22□□□□□ -0.29
USP39-206ENST00000448971 OR2M3Q8NG83 312 aa13.22□□□□□ -0.29
USP39-206ENST00000448971 OR4C3Q8NH37 302 aa13.22□□□□□ -0.29
USP39-206ENST00000448971 FAM110BQ8TC76 370 aa13.22□□□□□ -0.29
USP39-206ENST00000448971 CA5BP1Q8WTZ4 195 aa13.22□□□□□ -0.29
USP39-206ENST00000448971 ABTB1Q969K4 478 aaPredicted RBP13.22□□□□□ -0.29
USP39-206ENST00000448971 SDCCAG3Q96C92 435 aa13.22□□□□□ -0.29
USP39-206ENST00000448971 POM121Q96HA1 1249 aa13.22□□□□□ -0.29
USP39-206ENST00000448971 INPP5KQ9BT40 448 aa13.22□□□□□ -0.29
USP39-206ENST00000448971 UGT2B28Q9BY64 529 aa13.22□□□□□ -0.29
USP39-206ENST00000448971 RTN4RQ9BZR6 473 aa13.22□□□□□ -0.29
USP39-206ENST00000448971 UBQLN4Q9NRR5 601 aa13.22□□□□□ -0.29
USP39-206ENST00000448971 EXD2Q9NVH0 621 aa13.22□□□□□ -0.29
USP39-206ENST00000448971 MED11Q9P086 117 aa13.22□□□□□ -0.29
USP39-206ENST00000448971 KCNE3Q9Y6H6 103 aa13.22□□□□□ -0.29
USP39-206ENST00000448971 CCDC154A6NI56 674 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 H0Y3Z8 333 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 NR5A2O00482 541 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 AGR2O95994 175 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 ACTL6AO96019 429 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 GSNP06396 782 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 BMP7P18075 431 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 HK1P19367 917 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 TBXA2RP21731 343 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 CDKN2CP42773 168 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 RNF144AP50876 292 aaPredicted RBP13.21□□□□□ -0.29
USP39-206ENST00000448971 ANXA11P50995 505 aaKnown RBP13.21□□□□□ -0.29
USP39-206ENST00000448971 C17orf67Q0P5P2 114 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 NHSL2Q5HYW2 709 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 DCST1Q5T197 706 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 ENPP6Q6UWR7 440 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 APOOLQ6UXV4 268 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 MSANTD1Q6ZTZ1 278 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 MISPQ8IVT2 679 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 ULK2Q8IYT8 1036 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 MARVELD2Q8N4S9 558 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 GOT1L1Q8NHS2 421 aaPredicted RBP13.21□□□□□ -0.29
USP39-206ENST00000448971 PNPT1Q8TCS8 783 aaKnown RBP13.21□□□□□ -0.29
USP39-206ENST00000448971 DUSP19Q8WTR2 217 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 RND1Q92730 232 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 NEURL3Q96EH8 262 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 SH3YL1Q96HL8 342 aaPredicted RBP13.21□□□□□ -0.29
USP39-206ENST00000448971 TIMP4Q99727 224 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 HHATLQ9HCP6 504 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 DCTN4Q9UJW0 460 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 FAM215AQ9Y5M1 114 aa13.21□□□□□ -0.29
USP39-206ENST00000448971 A0A0G2JND7 137 aa13.2□□□□□ -0.3
USP39-206ENST00000448971 A0A1W2PQD3 144 aa13.2□□□□□ -0.3
USP39-206ENST00000448971 FAM234BA2RU67 622 aa13.2□□□□□ -0.3
USP39-206ENST00000448971 B4DXG7 233 aa13.2□□□□□ -0.3
USP39-206ENST00000448971 FAM47E-STBD1D6RA91 191 aa13.2□□□□□ -0.3
USP39-206ENST00000448971 OR12D1P0DN82 309 aa13.2□□□□□ -0.3
USP39-206ENST00000448971 TROVE2P10155 538 aaKnown RBP eCLIP13.2□□□□□ -0.3
USP39-206ENST00000448971 NUP107P57740 925 aa13.2□□□□□ -0.3
USP39-206ENST00000448971 LSM11P83369 360 aaKnown RBP eCLIP13.2□□□□□ -0.3
USP39-206ENST00000448971 SQLEQ14534 574 aa13.2□□□□□ -0.3
USP39-206ENST00000448971 VASNQ6EMK4 673 aa13.2□□□□□ -0.3
USP39-206ENST00000448971 RNF130Q86XS8 419 aa13.2□□□□□ -0.3
USP39-206ENST00000448971 OR10Q1Q8NGQ4 319 aa13.2□□□□□ -0.3
USP39-206ENST00000448971 PHOSPHO1Q8TCT1 267 aa13.2□□□□□ -0.3
USP39-206ENST00000448971 MIPOL1Q8TD10 442 aa13.2□□□□□ -0.3
USP39-206ENST00000448971 XAGE5Q8WWM1 108 aa13.2□□□□□ -0.3
USP39-206ENST00000448971 RAB8BQ92930 207 aa13.2□□□□□ -0.3
USP39-206ENST00000448971 VPS33AQ96AX1 596 aa13.2□□□□□ -0.3
USP39-206ENST00000448971 C1GALT1C1Q96EU7 318 aa13.2□□□□□ -0.3
USP39-206ENST00000448971 ITCHQ96J02 903 aa13.2□□□□□ -0.3
USP39-206ENST00000448971 SIKE1Q9BRV8 207 aa13.2□□□□□ -0.3
USP39-206ENST00000448971 PRDM14Q9GZV8 571 aa13.2□□□□□ -0.3
USP39-206ENST00000448971 HOXD1Q9GZZ0 328 aa13.2□□□□□ -0.3
USP39-206ENST00000448971 VDAC3Q9Y277 283 aa13.2□□□□□ -0.3
USP39-206ENST00000448971 NINQ8N4C6 2090 aa13.19□□□□□ -0.3
USP39-206ENST00000448971 PHF3Q92576 2039 aaKnown RBP13.19□□□□□ -0.3
USP39-206ENST00000448971 H3BNH8 94 aa13.19□□□□□ -0.3
USP39-206ENST00000448971 HCRTR2O43614 444 aa13.19□□□□□ -0.3
USP39-206ENST00000448971 TNFRSF21O75509 655 aa13.19□□□□□ -0.3
USP39-206ENST00000448971 STX11O75558 287 aa13.19□□□□□ -0.3
USP39-206ENST00000448971 CD1EP15812 388 aa13.19□□□□□ -0.3
USP39-206ENST00000448971 NCF2P19878 526 aaPredicted RBP13.19□□□□□ -0.3
USP39-206ENST00000448971 ZFP36L2P47974 494 aaKnown RBP13.19□□□□□ -0.3
USP39-206ENST00000448971 ZNF41P51814 821 aaPredicted RBP13.19□□□□□ -0.3
USP39-206ENST00000448971 SRYQ05066 204 aa13.19□□□□□ -0.3
USP39-206ENST00000448971 TFF3Q07654 80 aa13.19□□□□□ -0.3
USP39-206ENST00000448971 PMPCAQ10713 525 aa13.19□□□□□ -0.3
USP39-206ENST00000448971 RCAN2Q14206 197 aa13.19□□□□□ -0.3
USP39-206ENST00000448971 SF3B4Q15427 424 aaKnown RBP eCLIP13.19□□□□□ -0.3
USP39-206ENST00000448971 GPR68Q15743 365 aa13.19□□□□□ -0.3
USP39-206ENST00000448971 CD226Q15762 336 aa13.19□□□□□ -0.3
USP39-206ENST00000448971 ACSF3Q4G176 576 aaPredicted RBP13.19□□□□□ -0.3
USP39-206ENST00000448971 GPAT3Q53EU6 434 aa13.19□□□□□ -0.3
USP39-206ENST00000448971 TMCO5AQ8N6Q1 288 aa13.19□□□□□ -0.3
USP39-206ENST00000448971 CHDHQ8NE62 594 aaPredicted RBP13.19□□□□□ -0.3
USP39-206ENST00000448971 LILRB4Q8NHJ6 448 aa13.19□□□□□ -0.3
USP39-206ENST00000448971 RFWD2Q8NHY2 731 aa13.19□□□□□ -0.3
USP39-206ENST00000448971 TRIB1Q96RU8 372 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms