RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 NPIPA7E9PJI5 369 aa18.64■□□□□ 0.57
SDC1-205ENST00000447124 OIP5O43482 229 aa18.64■□□□□ 0.57
SDC1-205ENST00000447124 DHRS4L1P0CG22 281 aa18.64■□□□□ 0.57
SDC1-205ENST00000447124 NPIPA8P0DM63 369 aa18.64■□□□□ 0.57
SDC1-205ENST00000447124 DDX5P17844 614 aaKnown RBP18.64■□□□□ 0.57
SDC1-205ENST00000447124 PRPS1L1P21108 318 aa18.64■□□□□ 0.57
SDC1-205ENST00000447124 CLDN8P56748 225 aa18.64■□□□□ 0.57
SDC1-205ENST00000447124 OCRLQ01968 901 aa18.64■□□□□ 0.57
SDC1-205ENST00000447124 EMX2Q04743 252 aa18.64■□□□□ 0.57
SDC1-205ENST00000447124 POU4F3Q15319 338 aa18.64■□□□□ 0.57
SDC1-205ENST00000447124 CHI3L2Q15782 390 aa18.64■□□□□ 0.57
SDC1-205ENST00000447124 PLPPR5Q32ZL2 321 aa18.64■□□□□ 0.57
SDC1-205ENST00000447124 TNFAIP8L3Q5GJ75 292 aa18.64■□□□□ 0.57
SDC1-205ENST00000447124 GTPBP8Q8N3Z3 284 aaPredicted RBP18.64■□□□□ 0.57
SDC1-205ENST00000447124 NATD1Q8N6N6 113 aa18.64■□□□□ 0.57
SDC1-205ENST00000447124 ZNF781Q8N8C0 355 aa18.64■□□□□ 0.57
SDC1-205ENST00000447124 ACTRT2Q8TDY3 377 aa18.64■□□□□ 0.57
SDC1-205ENST00000447124 ACTRT3Q9BYD9 372 aa18.64■□□□□ 0.57
SDC1-205ENST00000447124 EIF3LQ9Y262 564 aaKnown RBP18.64■□□□□ 0.57
SDC1-205ENST00000447124 ACANP16112 2415 aa18.64■□□□□ 0.57
SDC1-205ENST00000447124 ZFHX3Q15911 3703 aa18.63■□□□□ 0.57
SDC1-205ENST00000447124 A0A1W2PQD3 144 aa18.63■□□□□ 0.57
SDC1-205ENST00000447124 RGS16O15492 202 aaPredicted RBP18.63■□□□□ 0.57
SDC1-205ENST00000447124 EFNA2O43921 213 aa18.63■□□□□ 0.57
SDC1-205ENST00000447124 SERPINE1P05121 402 aa18.63■□□□□ 0.57
SDC1-205ENST00000447124 ZNF17P17021 662 aa18.63■□□□□ 0.57
SDC1-205ENST00000447124 IL11P20809 199 aa18.63■□□□□ 0.57
SDC1-205ENST00000447124 RNF144AP50876 292 aaPredicted RBP18.63■□□□□ 0.57
SDC1-205ENST00000447124 C21orf58P58505 322 aa18.63■□□□□ 0.57
SDC1-205ENST00000447124 ABCE1P61221 599 aaKnown RBP18.63■□□□□ 0.57
SDC1-205ENST00000447124 RPS3AP61247 264 aaKnown RBP18.63■□□□□ 0.57
SDC1-205ENST00000447124 CTU2Q2VPK5 515 aaKnown RBP18.63■□□□□ 0.57
SDC1-205ENST00000447124 LSM12Q3MHD2 195 aaKnown RBP18.63■□□□□ 0.57
SDC1-205ENST00000447124 KLHL26Q53HC5 615 aa18.63■□□□□ 0.57
SDC1-205ENST00000447124 ZNF610Q8N9Z0 462 aa18.63■□□□□ 0.57
SDC1-205ENST00000447124 B4GALNT2Q8NHY0 566 aa18.63■□□□□ 0.57
SDC1-205ENST00000447124 PPP1R14CQ8TAE6 165 aa18.63■□□□□ 0.57
SDC1-205ENST00000447124 ZNF524Q96C55 264 aa18.63■□□□□ 0.57
SDC1-205ENST00000447124 CHMP6Q96FZ7 201 aa18.63■□□□□ 0.57
SDC1-205ENST00000447124 PPP1R36Q96LQ0 422 aa18.63■□□□□ 0.57
SDC1-205ENST00000447124 WFIKKN1Q96NZ8 548 aa18.63■□□□□ 0.57
SDC1-205ENST00000447124 SORT1Q99523 831 aa18.63■□□□□ 0.57
SDC1-205ENST00000447124 PRPF18Q99633 342 aaKnown RBP18.63■□□□□ 0.57
SDC1-205ENST00000447124 DUSP26Q9BV47 211 aa18.63■□□□□ 0.57
SDC1-205ENST00000447124 AKTIPQ9H8T0 292 aa18.63■□□□□ 0.57
SDC1-205ENST00000447124 ATAD3AQ9NVI7 634 aa18.63■□□□□ 0.57
SDC1-205ENST00000447124 RAB21Q9UL25 225 aa18.63■□□□□ 0.57
SDC1-205ENST00000447124 A0A0J9YW62 118 aa18.62■□□□□ 0.57
SDC1-205ENST00000447124 C7orf72A4D263 438 aa18.62■□□□□ 0.57
SDC1-205ENST00000447124 SCDO00767 359 aa18.62■□□□□ 0.57
SDC1-205ENST00000447124 EIF1AYO14602 144 aaKnown RBP18.62■□□□□ 0.57
SDC1-205ENST00000447124 BIRC5O15392 142 aa18.62■□□□□ 0.57
SDC1-205ENST00000447124 ZNF500O60304 480 aaPredicted RBP18.62■□□□□ 0.57
SDC1-205ENST00000447124 HSPA4LO95757 839 aa18.62■□□□□ 0.57
SDC1-205ENST00000447124 HPGDP15428 266 aa18.62■□□□□ 0.57
SDC1-205ENST00000447124 DNASE1P24855 282 aa18.62■□□□□ 0.57
SDC1-205ENST00000447124 CPOXP36551 454 aa18.62■□□□□ 0.57
SDC1-205ENST00000447124 CD79BP40259 229 aa18.62■□□□□ 0.57
SDC1-205ENST00000447124 EIF1AXP47813 144 aaKnown RBP18.62■□□□□ 0.57
SDC1-205ENST00000447124 PCYT1AP49585 367 aa18.62■□□□□ 0.57
SDC1-205ENST00000447124 RAC1P63000 192 aa18.62■□□□□ 0.57
SDC1-205ENST00000447124 HBA1P69905 142 aa18.62■□□□□ 0.57
SDC1-205ENST00000447124 TP53BP2Q13625 1128 aa18.62■□□□□ 0.57
SDC1-205ENST00000447124 PDCD2Q16342 344 aaPredicted RBP18.62■□□□□ 0.57
SDC1-205ENST00000447124 SGCBQ16585 318 aa18.62■□□□□ 0.57
SDC1-205ENST00000447124 DDX59Q5T1V6 619 aaKnown RBP eCLIP18.62■□□□□ 0.57
SDC1-205ENST00000447124 C22orf34Q6ZV56 151 aa18.62■□□□□ 0.57
SDC1-205ENST00000447124 OR56A1Q8NGH5 318 aa18.62■□□□□ 0.57
SDC1-205ENST00000447124 ADAMTS15Q8TE58 950 aa18.62■□□□□ 0.57
SDC1-205ENST00000447124 RNF145Q96MT1 663 aa18.62■□□□□ 0.57
SDC1-205ENST00000447124 TMUB1Q9BVT8 246 aa18.62■□□□□ 0.57
SDC1-205ENST00000447124 BHLHE41Q9C0J9 482 aaPredicted RBP18.62■□□□□ 0.57
SDC1-205ENST00000447124 SSU72Q9NP77 194 aaKnown RBP18.62■□□□□ 0.57
SDC1-205ENST00000447124 ASIC5Q9NY37 505 aa18.62■□□□□ 0.57
SDC1-205ENST00000447124 TESMINQ9Y4I5 508 aa18.62■□□□□ 0.57
SDC1-205ENST00000447124 NPIPB9F8W1W9 429 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 ADAMDEC1O15204 470 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 CFLARO15519 480 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 SIAH2O43255 324 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 ATE1O95260 518 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 LINGO3P0C6S8 592 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 PGS1Q32NB8 556 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 SPDYE7PQ495Y7 208 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 DCST2Q5T1A1 773 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 FBXW10Q5XX13 1052 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 CBLN3Q6UW01 205 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 PAMR1Q6UXH9 720 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 CAMKMTQ7Z624 323 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 MISPQ8IVT2 679 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 WDR75Q8IWA0 830 aaKnown RBP18.61■□□□□ 0.57
SDC1-205ENST00000447124 CLECL1Q8IZS7 167 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 CLEC4FQ8N1N0 589 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 OR10D3Q8NH80 312 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 OR5AK3PQ8NH89 298 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 SFXN5Q8TD22 340 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 ZBTB8AQ96BR9 441 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 OR7D2Q96RA2 312 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 SERHL2Q9H4I8 314 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 HHATLQ9HCP6 504 aa18.61■□□□□ 0.57
SDC1-205ENST00000447124 NDRG3Q9UGV2 375 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms