RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 ATAD3BQ5T9A4 648 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 C16orf62Q7Z3J2 963 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 GDF7Q7Z4P5 450 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 NAXEQ8NCW5 288 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 CHDHQ8NE62 594 aaPredicted RBP13.74□□□□□ -0.21
LIMS3-201ENST00000437679 OR5M1Q8NGP8 315 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 B4GALNT2Q8NHY0 566 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 PHOSPHO1Q8TCT1 267 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 MIPOL1Q8TD10 442 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 LRRC46Q96FV0 321 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 SH3YL1Q96HL8 342 aaPredicted RBP13.74□□□□□ -0.21
LIMS3-201ENST00000437679 MARK4Q96L34 752 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 OR52B2Q96RD2 323 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 PANX1Q96RD7 426 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 SDF2Q99470 211 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 TM9SF2Q99805 663 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 SLC35A5Q9BS91 424 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 OR51I1Q9H343 314 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 SERHL2Q9H4I8 314 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 NPDC1Q9NQX5 325 aaPredicted RBP13.74□□□□□ -0.21
LIMS3-201ENST00000437679 ZIM2Q9NZV7 527 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 STOML1Q9UBI4 398 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 ZNF629Q9UEG4 869 aaPredicted RBP13.74□□□□□ -0.21
LIMS3-201ENST00000437679 VDAC3Q9Y277 283 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 ZNF337Q9Y3M9 751 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 KIAA1549Q9HCM3 1950 aa13.74□□□□□ -0.21
LIMS3-201ENST00000437679 ADGRG4Q8IZF6 3080 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 CCDC154A6NI56 674 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 H3BML4 177 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 HCRTR2O43614 444 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 TGDSO95455 350 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 IL6P05231 212 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 TMIGD3P0DMS9 266 aaPredicted RBP13.73□□□□□ -0.21
LIMS3-201ENST00000437679 PRF1P14222 555 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 CTSSP25774 331 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 KHKP50053 298 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 ZNF41P51814 821 aaPredicted RBP13.73□□□□□ -0.21
LIMS3-201ENST00000437679 ZNF136P52737 540 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 CASP9P55211 416 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 CD226Q15762 336 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 ARHGAP11BQ3KRB8 267 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 KLHL26Q53HC5 615 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 SAXO2Q658L1 398 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 EPGNQ6UW88 154 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 ARSKQ6UWY0 536 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 GRAMD2AQ8IUY3 354 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 UBQLNLQ8IYU4 475 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 ZNF614Q8N883 585 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 C9orf106Q8NAJ2 232 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 XAGE5Q8WWM1 108 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 WNT2BQ93097 391 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 NEURL3Q96EH8 262 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 ZFP3Q96NJ6 502 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 UCN2Q96RP3 112 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 ACBD3Q9H3P7 528 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 SLCO1B3Q9NPD5 702 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 AP4B1Q9Y6B7 739 aa13.73□□□□□ -0.21
LIMS3-201ENST00000437679 MED12LQ86YW9 2145 aa13.72□□□□□ -0.21
LIMS3-201ENST00000437679 GTPBP1O00178 669 aaKnown RBP13.72□□□□□ -0.21
LIMS3-201ENST00000437679 POLR3GO15318 223 aaPredicted RBP13.72□□□□□ -0.21
LIMS3-201ENST00000437679 SEC14L5O43304 696 aa13.72□□□□□ -0.21
LIMS3-201ENST00000437679 STX11O75558 287 aa13.72□□□□□ -0.21
LIMS3-201ENST00000437679 OR12D1P0DN82 309 aa13.72□□□□□ -0.21
LIMS3-201ENST00000437679 ZNF17P17021 662 aa13.72□□□□□ -0.21
LIMS3-201ENST00000437679 OPRM1P35372 400 aa13.72□□□□□ -0.21
LIMS3-201ENST00000437679 ANXA11P50995 505 aaKnown RBP13.72□□□□□ -0.21
LIMS3-201ENST00000437679 GPR68Q15743 365 aa13.72□□□□□ -0.21
LIMS3-201ENST00000437679 TMEM44Q2T9K0 475 aa13.72□□□□□ -0.21
LIMS3-201ENST00000437679 TNFAIP8L2Q6P589 184 aaPredicted RBP13.72□□□□□ -0.21
LIMS3-201ENST00000437679 ZNF621Q6ZSS3 439 aa13.72□□□□□ -0.21
LIMS3-201ENST00000437679 P4HA3Q7Z4N8 544 aa13.72□□□□□ -0.21
LIMS3-201ENST00000437679 ADGRE4PQ86SQ3 457 aa13.72□□□□□ -0.21
LIMS3-201ENST00000437679 MIER2Q8N344 545 aa13.72□□□□□ -0.21
LIMS3-201ENST00000437679 ACBD4Q8NC06 268 aa13.72□□□□□ -0.21
LIMS3-201ENST00000437679 SMPDL3BQ92485 455 aa13.72□□□□□ -0.21
LIMS3-201ENST00000437679 ZBTB8AQ96BR9 441 aa13.72□□□□□ -0.21
LIMS3-201ENST00000437679 NMUR2Q9GZQ4 415 aa13.72□□□□□ -0.21
LIMS3-201ENST00000437679 SDR39U1Q9NRG7 319 aaPredicted RBP13.72□□□□□ -0.21
LIMS3-201ENST00000437679 MED17Q9NVC6 651 aa13.72□□□□□ -0.21
LIMS3-201ENST00000437679 CLCF1Q9UBD9 225 aa13.72□□□□□ -0.21
LIMS3-201ENST00000437679 DTNAQ9Y4J8 743 aa13.72□□□□□ -0.21
LIMS3-201ENST00000437679 TEX15Q9BXT5 2789 aa13.71□□□□□ -0.21
LIMS3-201ENST00000437679 SHISA8B8ZZ34 492 aa13.71□□□□□ -0.21
LIMS3-201ENST00000437679 NPIPB9F8W1W9 429 aa13.71□□□□□ -0.21
LIMS3-201ENST00000437679 RFXANKO14593 260 aa13.71□□□□□ -0.21
LIMS3-201ENST00000437679 RCBTB2O95199 551 aa13.71□□□□□ -0.21
LIMS3-201ENST00000437679 NUDT14O95848 222 aa13.71□□□□□ -0.21
LIMS3-201ENST00000437679 IL18BPO95998 194 aa13.71□□□□□ -0.21
LIMS3-201ENST00000437679 IGFBP2P18065 325 aa13.71□□□□□ -0.21
LIMS3-201ENST00000437679 SSTR2P30874 369 aa13.71□□□□□ -0.21
LIMS3-201ENST00000437679 ASCL1P50553 236 aa13.71□□□□□ -0.21
LIMS3-201ENST00000437679 RNF144AP50876 292 aaPredicted RBP13.71□□□□□ -0.21
LIMS3-201ENST00000437679 SUMO3P55854 103 aaPredicted RBP13.71□□□□□ -0.21
LIMS3-201ENST00000437679 RPS3AP61247 264 aaKnown RBP13.71□□□□□ -0.21
LIMS3-201ENST00000437679 STX1BP61266 288 aa13.71□□□□□ -0.21
LIMS3-201ENST00000437679 TXNL4AP83876 142 aaKnown RBP13.71□□□□□ -0.21
LIMS3-201ENST00000437679 ZNF117Q03924 483 aa13.71□□□□□ -0.21
LIMS3-201ENST00000437679 HEPHL1Q6MZM0 1159 aa13.71□□□□□ -0.21
LIMS3-201ENST00000437679 RNF130Q86XS8 419 aa13.71□□□□□ -0.21
LIMS3-201ENST00000437679 GTPBP8Q8N3Z3 284 aaPredicted RBP13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 115.1 ms