RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 USP22Q9UPT9 525 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 SH3GLB1Q9Y371 365 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 DSPPQ9NZW4 1301 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 EML6Q6ZMW3 1958 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 NPIPA5A0A0B4J1W7 369 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 NPIPA7E9PJI5 369 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 ACOT7O00154 380 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 HCRTR2O43614 444 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 OPN1SWP03999 348 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 FESP07332 822 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 NPIPA8P0DM63 369 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 ELAVL4P26378 380 aaKnown RBP9.26□□□□□ -0.93
CD44-207ENST00000425428 ADH7P40394 386 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 CASP3P42574 277 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 ZNF41P51814 821 aaPredicted RBP9.26□□□□□ -0.93
CD44-207ENST00000425428 PLGLB1Q02325 96 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 CBFBQ13951 182 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 FGFBP1Q14512 234 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 TOMM20Q15388 145 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 FXNQ16595 210 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 KLHL26Q53HC5 615 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 ZNF766Q5HY98 468 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 MRPL2Q5T653 305 aaKnown RBP9.26□□□□□ -0.93
CD44-207ENST00000425428 AP1ARQ63HQ0 302 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 VRK2Q86Y07 508 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 OR1J4Q8NGS1 313 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 ZNF563Q8TA94 476 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 C9orf43Q8TAL5 461 aaPredicted RBP9.26□□□□□ -0.93
CD44-207ENST00000425428 NR4A3Q92570 626 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 HGDQ93099 445 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 SLC47A1Q96FL8 570 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 QRSL1Q9H0R6 528 aaKnown RBP9.26□□□□□ -0.93
CD44-207ENST00000425428 MAGIXQ9H6Y5 334 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 FBXO34Q9NWN3 711 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 PLA2G3Q9NZ20 509 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 STOML1Q9UBI4 398 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 WIF1Q9Y5W5 379 aa9.26□□□□□ -0.93
CD44-207ENST00000425428 DHRS12A0PJE2 317 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 PRAMEF27A3QJZ7 478 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 TAF4O00268 1085 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 GNGT2O14610 69 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 MAN1A2O60476 641 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 F10P00742 488 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 SP1P08047 785 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 LINGO3P0C6S8 592 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 UBTFL6P0CB48 400 aaPredicted RBP9.25□□□□□ -0.93
CD44-207ENST00000425428 PGCP20142 388 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 CD247P20963 164 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 KCNJ5P48544 419 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 SUMO3P55854 103 aaPredicted RBP9.25□□□□□ -0.93
CD44-207ENST00000425428 KCNAB2Q13303 367 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 PRAMEF20Q5VT98 475 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 SPINK14Q6IE38 97 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 ZNF836Q6ZNA1 936 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 MARCH3Q86UD3 253 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 GATSQ8NAP1 163 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 POGLUT1Q8NBL1 392 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 B4GALNT2Q8NHY0 566 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 DUSP19Q8WTR2 217 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 TMEM234Q8WY98 164 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 TAMM41Q96BW9 452 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 HSH2DQ96JZ2 352 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 NODALQ96S42 347 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 SEPHS2Q99611 448 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 LAT2Q9GZY6 243 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 TMEM27Q9HBJ8 222 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 KLHL1Q9NR64 748 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 PCDHGB6Q9Y5F9 930 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 CHCHD2Q9Y6H1 151 aaPredicted RBP9.25□□□□□ -0.93
CD44-207ENST00000425428 V9GYQ6 96 aa9.25□□□□□ -0.93
CD44-207ENST00000425428 ACOT8O14734 319 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 FADS1O60427 444 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 FKBP6O75344 327 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 PRKD3O94806 890 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 LGI1O95970 557 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 FABP3P05413 133 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 RAP2AP10114 183 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 FCGR1AP12314 374 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 RPS4Y1P22090 263 aaKnown RBP9.24□□□□□ -0.93
CD44-207ENST00000425428 TNFSF10P50591 281 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 P2RX1P51575 399 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 ARHGDIAP52565 204 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 SMIM11AP58511 58 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 ACTR3P61158 418 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 MS4A2Q01362 244 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 DMTNQ08495 405 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 GANABQ14697 944 aaKnown RBP9.24□□□□□ -0.93
CD44-207ENST00000425428 IGFL2Q6UWQ7 119 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 LYPD8Q6UX82 237 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 IGFL3Q6UXB1 125 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 ASB18Q6ZVZ8 466 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 HMGN2P46Q86SG4 172 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 GRAMD2AQ8IUY3 354 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 RNF217Q8TC41 542 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 GRHL3Q8TE85 626 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 ABHD17AQ96GS6 310 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 SH3YL1Q96HL8 342 aaPredicted RBP9.24□□□□□ -0.93
CD44-207ENST00000425428 ZNF347Q96SE7 839 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 ZNF559Q9BR84 538 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 ANGPTL4Q9BY76 406 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms