RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 DUSP23Q9BVJ7 150 aa9.21□□□□□ -0.93
USP54-205ENST00000424265 GORASP2Q9H8Y8 452 aa9.21□□□□□ -0.93
USP54-205ENST00000424265 CYTIPO60759 359 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 CD1DP15813 335 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 ANXA7P20073 488 aaKnown RBP9.21□□□□□ -0.94
USP54-205ENST00000424265 CD38P28907 300 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 FOXO1Q12778 655 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 TMPRSS11BQ86T26 416 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 SLITRK4Q8IW52 837 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 CLDN19Q8N6F1 224 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 EEF1AKMT1Q8WVE0 214 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 LRRC58Q96CX6 371 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 PIGQQ9BRB3 760 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 THUMPD3Q9BV44 507 aaKnown RBP9.21□□□□□ -0.94
USP54-205ENST00000424265 MTG2Q9H4K7 406 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 CDCP1Q9H5V8 836 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 OR6C2Q9NZP2 312 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 CDRT1O95170 752 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 CER1O95813 267 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 HTR1AP08908 422 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 EBLN1P0CF75 366 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 PRKACGP22612 351 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 CERS1P27544 350 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 HSPA7P48741 367 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 CHIT1Q13231 466 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 SEZ6L2Q6UXD5 910 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 GLCCI1Q86VQ1 547 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 OR2L2Q8NH16 312 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 TM9SF4Q92544 642 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 OR5M11Q96RB7 305 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 SIRT7Q9NRC8 400 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 ZNF358Q9NW07 568 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 GSTK1Q9Y2Q3 226 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 ENTPD2Q9Y5L3 495 aa9.21□□□□□ -0.94
USP54-205ENST00000424265 RPS10-NUDT3A0A1W2PQS6 291 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 A8MT66 165 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 NUDT19A8MXV4 375 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 B4E171 279 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 RRP8O43159 456 aaKnown RBP9.2□□□□□ -0.94
USP54-205ENST00000424265 PLRG1O43660 514 aaKnown RBP9.2□□□□□ -0.94
USP54-205ENST00000424265 HOXB6P17509 224 aaKnown RBP9.2□□□□□ -0.94
USP54-205ENST00000424265 PPIBP23284 216 aaKnown RBP9.2□□□□□ -0.94
USP54-205ENST00000424265 CXCR4P61073 352 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 FOXM1Q08050 763 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 HNRNPA0Q13151 305 aaKnown RBP9.2□□□□□ -0.94
USP54-205ENST00000424265 RSU1Q15404 277 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 KRBOX4Q5JUW0 171 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 SH2D5Q6ZV89 423 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 ZNF367Q7RTV3 350 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 SZRD1Q7Z422 152 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 ATCAYQ86WG3 371 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 OR4C6Q8NH72 309 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 GCDHQ92947 438 aaPredicted RBP9.2□□□□□ -0.94
USP54-205ENST00000424265 PLA2G2FQ9BZM2 168 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 FXYD6-FXYD2A0A087WZ82 144 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 TMEM72A0PK05 275 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 UGDHO60701 494 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 MTX2O75431 263 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 IFNA17P01571 189 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 CD1EP15812 388 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 CCR6P51684 374 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 PTPRCAPQ14761 206 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 TECRLQ5HYJ1 363 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 C16orf54Q6UWD8 224 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 MSANTD1Q6ZTZ1 278 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 OR9A2Q8NGT5 310 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 OR14A16Q8NHC5 309 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 THRSPQ92748 146 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 PEX11GQ96HA9 241 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 LRR1Q96L50 414 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 SLC12A9Q9BXP2 914 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 TPSD1Q9BZJ3 242 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 FXYD6Q9H0Q3 95 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 SLC22A14Q9Y267 594 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 A0A1W2PQL4 384 aaPredicted RBP9.2□□□□□ -0.94
USP54-205ENST00000424265 ZNF195O14628 629 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 RAD1O60671 282 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 HSD3B1P14060 373 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 NQO2P16083 231 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 ITPKAP23677 461 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 HSD3B2P26439 372 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 S100A3P33764 101 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 STAT5AP42229 794 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 EEFSECP57772 596 aaKnown RBP9.2□□□□□ -0.94
USP54-205ENST00000424265 RBMS2Q15434 407 aaKnown RBP9.2□□□□□ -0.94
USP54-205ENST00000424265 AGTRAPQ6RW13 159 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 SLC46A3Q7Z3Q1 461 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 STPG2Q8N412 459 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 C9orf43Q8TAL5 461 aaPredicted RBP9.2□□□□□ -0.94
USP54-205ENST00000424265 VWCEQ96DN2 955 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 MYEOVQ96EZ4 313 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 C5orf34Q96MH7 638 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 OR2M2Q96R28 347 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 SLC38A1Q9H2H9 487 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 NKIRAS2Q9NYR9 191 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 LDLRAD4O15165 306 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 CSF3P09919 207 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 MAN2A2P49641 1150 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 NHLH2Q02577 135 aa9.2□□□□□ -0.94
USP54-205ENST00000424265 POMGNT2Q8NAT1 580 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms