RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 ITPR2Q14571 2701 aa13.39□□□□□ -0.27
LIMS4-201ENST00000413601 HMGB1P1B2RPK0 211 aaPredicted RBP13.38□□□□□ -0.27
LIMS4-201ENST00000413601 DVL2O14641 736 aa13.38□□□□□ -0.27
LIMS4-201ENST00000413601 DIAPH2O60879 1101 aa13.38□□□□□ -0.27
LIMS4-201ENST00000413601 C1QCP02747 245 aa13.38□□□□□ -0.27
LIMS4-201ENST00000413601 PGRP06401 933 aa13.38□□□□□ -0.27
LIMS4-201ENST00000413601 IDO1P14902 403 aa13.38□□□□□ -0.27
LIMS4-201ENST00000413601 CHI3L1P36222 383 aaPredicted RBP13.38□□□□□ -0.27
LIMS4-201ENST00000413601 AGFG1P52594 562 aaKnown RBP13.38□□□□□ -0.27
LIMS4-201ENST00000413601 SUCLG1P53597 346 aaKnown RBP13.38□□□□□ -0.27
LIMS4-201ENST00000413601 ATP12AP54707 1039 aa13.38□□□□□ -0.27
LIMS4-201ENST00000413601 CLDN15P56746 228 aa13.38□□□□□ -0.27
LIMS4-201ENST00000413601 KLHL26Q53HC5 615 aa13.38□□□□□ -0.27
LIMS4-201ENST00000413601 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.38□□□□□ -0.27
LIMS4-201ENST00000413601 OLIG3Q7RTU3 272 aa13.38□□□□□ -0.27
LIMS4-201ENST00000413601 GDF7Q7Z4P5 450 aa13.38□□□□□ -0.27
LIMS4-201ENST00000413601 ZNF527Q8NB42 609 aa13.38□□□□□ -0.27
LIMS4-201ENST00000413601 GOT1L1Q8NHS2 421 aaPredicted RBP13.38□□□□□ -0.27
LIMS4-201ENST00000413601 MIPOL1Q8TD10 442 aa13.38□□□□□ -0.27
LIMS4-201ENST00000413601 DYDC1Q8WWB3 177 aa13.38□□□□□ -0.27
LIMS4-201ENST00000413601 C7orf26Q96N11 449 aa13.38□□□□□ -0.27
LIMS4-201ENST00000413601 NPAS1Q99742 590 aa13.38□□□□□ -0.27
LIMS4-201ENST00000413601 TREX2Q9BQ50 279 aaPredicted RBP13.38□□□□□ -0.27
LIMS4-201ENST00000413601 SLC35A5Q9BS91 424 aa13.38□□□□□ -0.27
LIMS4-201ENST00000413601 INPP5KQ9BT40 448 aa13.38□□□□□ -0.27
LIMS4-201ENST00000413601 HOXD1Q9GZZ0 328 aa13.38□□□□□ -0.27
LIMS4-201ENST00000413601 HHATLQ9HCP6 504 aa13.38□□□□□ -0.27
LIMS4-201ENST00000413601 CLCF1Q9UBD9 225 aa13.38□□□□□ -0.27
LIMS4-201ENST00000413601 ZNF629Q9UEG4 869 aaPredicted RBP13.38□□□□□ -0.27
LIMS4-201ENST00000413601 BTNL2Q9UIR0 455 aa13.38□□□□□ -0.27
LIMS4-201ENST00000413601 MAST4O15021 2626 aa13.38□□□□□ -0.27
LIMS4-201ENST00000413601 NPIPB9F8W1W9 429 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 H0YC42 278 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 LINC01387J3KSC0 135 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 UBDO15205 165 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 SEC14L5O43304 696 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 OIP5O43482 229 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 HCRTR2O43614 444 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 FCMRO60667 390 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 SLC22A3O75751 556 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 OR12D1P0DN82 309 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 CTSSP25774 331 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 CDKN2CP42773 168 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 TPD52P55327 224 aaPredicted RBP13.37□□□□□ -0.27
LIMS4-201ENST00000413601 DLX5P56178 289 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 CLDN20P56880 219 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 PPP2R2AP63151 447 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 ZNF117Q03924 483 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 FOXF2Q12947 444 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 TMEM44Q2T9K0 475 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 ARHGAP11BQ3KRB8 267 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 PDCD4Q53EL6 469 aaKnown RBP13.37□□□□□ -0.27
LIMS4-201ENST00000413601 SAXO2Q658L1 398 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 TNFAIP8L2Q6P589 184 aaPredicted RBP13.37□□□□□ -0.27
LIMS4-201ENST00000413601 EPGNQ6UW88 154 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 CHMP1BQ7LBR1 199 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 C16orf62Q7Z3J2 963 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 MTERF4Q7Z6M4 381 aaKnown RBP13.37□□□□□ -0.27
LIMS4-201ENST00000413601 MISPQ8IVT2 679 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 DMRTC2Q8IXT2 367 aaPredicted RBP13.37□□□□□ -0.27
LIMS4-201ENST00000413601 MEIOBQ8N635 442 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 ZNF614Q8N883 585 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 CHDHQ8NE62 594 aaPredicted RBP13.37□□□□□ -0.27
LIMS4-201ENST00000413601 B4GALNT2Q8NHY0 566 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 XAGE5Q8WWM1 108 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 SMPDL3BQ92485 455 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 RAB8BQ92930 207 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 WNT2BQ93097 391 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 NEURL3Q96EH8 262 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 PANX1Q96RD7 426 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 UCN2Q96RP3 112 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 TM9SF2Q99805 663 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 MKLN1Q9UL63 735 aa13.37□□□□□ -0.27
LIMS4-201ENST00000413601 A0A087WZY1 265 aa13.36□□□□□ -0.27
LIMS4-201ENST00000413601 CCDC154A6NI56 674 aa13.36□□□□□ -0.27
LIMS4-201ENST00000413601 STX11O75558 287 aa13.36□□□□□ -0.27
LIMS4-201ENST00000413601 SASH3O75995 380 aa13.36□□□□□ -0.27
LIMS4-201ENST00000413601 RCBTB2O95199 551 aa13.36□□□□□ -0.27
LIMS4-201ENST00000413601 TGM6O95932 706 aa13.36□□□□□ -0.27
LIMS4-201ENST00000413601 AK1P00568 194 aa13.36□□□□□ -0.27
LIMS4-201ENST00000413601 GSNP06396 782 aa13.36□□□□□ -0.27
LIMS4-201ENST00000413601 TMIGD3P0DMS9 266 aaPredicted RBP13.36□□□□□ -0.27
LIMS4-201ENST00000413601 ZNF41P51814 821 aaPredicted RBP13.36□□□□□ -0.27
LIMS4-201ENST00000413601 SNTB1Q13884 538 aaKnown RBP13.36□□□□□ -0.27
LIMS4-201ENST00000413601 GPR68Q15743 365 aa13.36□□□□□ -0.27
LIMS4-201ENST00000413601 GSTA3Q16772 222 aa13.36□□□□□ -0.27
LIMS4-201ENST00000413601 PLPPR5Q32ZL2 321 aa13.36□□□□□ -0.27
LIMS4-201ENST00000413601 NDUFAF6Q330K2 333 aa13.36□□□□□ -0.27
LIMS4-201ENST00000413601 PDZK1Q5T2W1 519 aa13.36□□□□□ -0.27
LIMS4-201ENST00000413601 HEPHL1Q6MZM0 1159 aa13.36□□□□□ -0.27
LIMS4-201ENST00000413601 CBLN3Q6UW01 205 aa13.36□□□□□ -0.27
LIMS4-201ENST00000413601 ZNF621Q6ZSS3 439 aa13.36□□□□□ -0.27
LIMS4-201ENST00000413601 GRAMD2AQ8IUY3 354 aa13.36□□□□□ -0.27
LIMS4-201ENST00000413601 GCNT2Q8N0V5 402 aa13.36□□□□□ -0.27
LIMS4-201ENST00000413601 GLB1L3Q8NCI6 653 aaPredicted RBP13.36□□□□□ -0.27
LIMS4-201ENST00000413601 INTS12Q96CB8 462 aaKnown RBP13.36□□□□□ -0.27
LIMS4-201ENST00000413601 SDR39U1Q9NRG7 319 aaPredicted RBP13.36□□□□□ -0.27
LIMS4-201ENST00000413601 INTS9Q9NV88 658 aaKnown RBP13.36□□□□□ -0.27
LIMS4-201ENST00000413601 MED17Q9NVC6 651 aa13.36□□□□□ -0.27
LIMS4-201ENST00000413601 EXD2Q9NVH0 621 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms