RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 CNIH3Q8TBE1 160 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 M1APQ8TC57 530 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 RAB2BQ8WUD1 216 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 IPCEF1Q8WWN9 437 aaPredicted RBP12.4□□□□□ -0.42
LIMS1-204ENST00000409441 ART5Q96L15 291 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 FER1L6-AS2Q96M78 137 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 COG8Q96MW5 612 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 FEVQ99581 238 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 NUDT9Q9BW91 350 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 CPNE5Q9HCH3 593 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 A0A087WV62 115 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 CCNB2O95067 398 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 GADD45GO95257 159 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 IGKV3-11P04433 115 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 TNFRSF1BP20333 461 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 PCMT1P22061 227 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 GGT2P36268 569 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 OR1E2P47887 323 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 SLC35A2P78381 396 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 Q0VFX4 171 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 TP53BP2Q13625 1128 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 GNA13Q14344 377 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 EXOC3L2Q2M3D2 409 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 FHL5Q5TD97 284 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 OR2L13Q8N349 312 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 SVOPQ8N4V2 548 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 SLC5A8Q8N695 610 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 APCDD1LQ8NCL9 501 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 OR7G1Q8NGA0 311 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 APOBEC4Q8WW27 367 aaKnown RBP12.4□□□□□ -0.42
LIMS1-204ENST00000409441 PROX1Q92786 737 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 BCL7BQ9BQE9 202 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 LHPPQ9H008 270 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 OR10A5Q9H207 317 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 ZNF556Q9HAH1 456 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 C3orf14Q9HBI5 128 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 ATP13A2Q9NQ11 1180 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 ACER3Q9NUN7 267 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 PTGFRNQ9P2B2 879 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 COPS7AQ9UBW8 275 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 C19orf53Q9UNZ5 99 aaPredicted RBP12.4□□□□□ -0.42
LIMS1-204ENST00000409441 POLHQ9Y253 713 aa12.4□□□□□ -0.42
LIMS1-204ENST00000409441 ARGFXA6NJG6 315 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 K7ENP7 123 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 EMC8O43402 210 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 SERPINB7O75635 380 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 CBX7O95931 251 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 CLPSP04118 112 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 CELA2AP08217 269 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 KCNJ5P48544 419 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 PRKAG1P54619 331 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 RRADP55042 308 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 UCNP55089 124 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 SLC37A1P57057 533 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 RPS26P62854 115 aaKnown RBP12.39□□□□□ -0.43
LIMS1-204ENST00000409441 MVKQ03426 396 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 DEFB109BQ30KR1 87 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 PRAMEF8Q5VWM4 474 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 PRAMEF7Q5VXH5 474 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 INO80CQ6PI98 192 aaPredicted RBP12.39□□□□□ -0.43
LIMS1-204ENST00000409441 KRT73Q86Y46 540 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 DEPDC4Q8N2C3 294 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 PARP8Q8N3A8 854 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 ZNF615Q8N8J6 731 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 SMYD1Q8NB12 490 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 OR52R1Q8NGF1 315 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 OR56A1Q8NGH5 318 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 BBS10Q8TAM1 723 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 MIPOL1Q8TD10 442 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 ELP5Q8TE02 316 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 DTNBP1Q96EV8 351 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 VMP1Q96GC9 406 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 ZNF354BQ96LW1 612 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 SPATA5L1Q9BVQ7 753 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 SEMA4CQ9C0C4 833 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 BCL2L10Q9HD36 194 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 MMP25Q9NPA2 562 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 ZCCHC3Q9NUD5 404 aaKnown RBP12.39□□□□□ -0.43
LIMS1-204ENST00000409441 PLCXD1Q9NUJ7 323 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 PAK1IP1Q9NWT1 392 aaPredicted RBP12.39□□□□□ -0.43
LIMS1-204ENST00000409441 NTMQ9P121 344 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 SH3GLB1Q9Y371 365 aa12.39□□□□□ -0.43
LIMS1-204ENST00000409441 GPC6Q9Y625 555 aaPredicted RBP12.39□□□□□ -0.43
LIMS1-204ENST00000409441 DMXL2Q8TDJ6 3036 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 ZNF99A8MXY4 864 aaPredicted RBP12.38□□□□□ -0.43
LIMS1-204ENST00000409441 SLC28A2O43868 658 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 FAM20BO75063 409 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 NME6O75414 186 aaPredicted RBP12.38□□□□□ -0.43
LIMS1-204ENST00000409441 OXSR1O95747 527 aaPredicted RBP12.38□□□□□ -0.43
LIMS1-204ENST00000409441 SERPINA7P05543 415 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 IFI6P09912 130 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 MATN1P21941 496 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 CBLP22681 906 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 FMO3P31513 532 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 TMPRSS3P57727 454 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 SMIM11AP58511 58 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 PRR5P85299 388 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 AIMP2Q13155 320 aaKnown RBP12.38□□□□□ -0.43
LIMS1-204ENST00000409441 DUSP8Q13202 625 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 MAPK11Q15759 364 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms