RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 SBSNQ6UWP8 590 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 TMEM135Q86UB9 458 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 STEAP2Q8NFT2 490 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 PRR11Q96HE9 360 aaPredicted RBP12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 CDCA3Q99618 268 aaPredicted RBP12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 TXNRD2Q9NNW7 524 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 GPR32O75388 356 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 TPPPO94811 219 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 PENKP01210 267 aaPredicted RBP12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 NUDT1P36639 197 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 KCNIP4Q6PIL6 250 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 GDPGP1Q6ZNW5 385 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 ADAMTS16Q8TE57 1224 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 ZNF419Q96HQ0 510 aaPredicted RBP12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 AMDHD1Q96NU7 426 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 CPEB1Q9BZB8 566 aaKnown RBP12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 PLCXD1Q9NUJ7 323 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 EBF1Q9UH73 591 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 LOC105369274A0A096LPK9 316 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 OR2T1O43869 369 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 CYS1Q717R9 158 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 SULF2Q8IWU5 870 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 OR4N4Q8N0Y3 316 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 FNDC8Q8TC99 324 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 CICQ96RK0 1608 aaPredicted RBP12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 NAV1Q8NEY1 1877 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 A0A1W2PPV4 95 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 LILRB3O75022 631 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 RETP07949 1114 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 BMP4P12644 408 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 CD53P19397 219 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 GALNT1Q10472 559 aaPredicted RBP12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 STK11Q15831 433 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 BPHLQ86WA6 291 aaPredicted RBP12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 NPRL2Q8WTW4 380 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 DUSP23Q9BVJ7 150 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 KCNJ16Q9NPI9 418 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 MARCH4Q9P2E8 410 aaPredicted RBP12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 RIMS3Q9UJD0 308 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 CDK1P06493 297 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 SF3A2Q15428 464 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 PKDCCQ504Y2 493 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 ZNF679Q8IYX0 411 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 OR52B6Q8NGF0 335 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 COQ10AQ96MF6 247 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 SNED1Q8TER0 1413 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 MYH1P12882 1939 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 E7ESA3 106 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 DUSP7Q16829 419 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 CLVS2Q5SYC1 327 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 FAM182AQ5T1J6 154 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 TMPRSS7Q7RTY8 843 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 BBS1Q8NFJ9 593 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 BADQ92934 168 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 LMF2Q9BU23 707 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 ACTR10Q9NZ32 417 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 ZNF337Q9Y3M9 751 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 PIP5K1CO60331 668 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 TIMP2P16035 220 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 PTPN6P29350 595 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 KIR2DS3Q14952 304 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 MYLIPQ8WY64 445 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 SMOXQ9NWM0 555 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 GOLGA4Q13439 2230 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 DVL2O14641 736 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 ARPC5O15511 151 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 MSMO1Q15800 293 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 TP53I3Q53FA7 332 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 TMEM244Q5VVB8 128 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 NETO1Q8TDF5 533 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 TMEM239Q8WW34 195 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 FUBP1Q96AE4 644 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 GPR62Q9BZJ7 368 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 SRPK3Q9UPE1 567 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 COL1A1P02452 1464 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 TOR1AO14656 332 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 LAMP1P11279 417 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 DRD5P21918 477 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 EEF1A1P68104 462 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 MAP4K2Q12851 820 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 HACD4Q5VWC8 232 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 APIPQ96GX9 242 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 SORCS2Q96PQ0 1159 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 INPP5KQ9BT40 448 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 RDH14Q9HBH5 336 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 PLEK2Q9NYT0 353 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 FUT1P19526 365 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 NPY5RQ15761 445 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 BATFQ16520 125 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 C12orf45Q8N5I9 185 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 C12orf76Q8N812 135 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 DMRT3Q9NQL9 472 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 INPP5EQ9NRR6 644 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 HEBP1Q9NRV9 189 aa12.06□□□□□ -0.48
CCDC88C-204ENST00000389857 RFPL3O75679 317 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 KCNK5O95279 499 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 LCKP06239 509 aa12.05□□□□□ -0.48
CCDC88C-204ENST00000389857 BMXP51813 675 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms