RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 PMPCAQ10713 525 aa8.61□□□□□ -1.03
LIMCH1-202ENST00000381753 OLIG2Q13516 323 aa8.61□□□□□ -1.03
LIMCH1-202ENST00000381753 SWI5Q1ZZU3 235 aa8.61□□□□□ -1.03
LIMCH1-202ENST00000381753 RBM20Q5T481 1227 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-202ENST00000381753 RGS7BPQ6MZT1 257 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-202ENST00000381753 MSANTD1Q6ZTZ1 278 aa8.61□□□□□ -1.03
LIMCH1-202ENST00000381753 ZFP90Q8TF47 636 aa8.61□□□□□ -1.03
LIMCH1-202ENST00000381753 CAVIN3Q969G5 261 aa8.61□□□□□ -1.03
LIMCH1-202ENST00000381753 CMTM3Q96MX0 182 aa8.61□□□□□ -1.03
LIMCH1-202ENST00000381753 PNPOQ9NVS9 261 aa8.61□□□□□ -1.03
LIMCH1-202ENST00000381753 DLGAP2Q9P1A6 1054 aa8.61□□□□□ -1.03
LIMCH1-202ENST00000381753 TRAPPC2LH3BP13 241 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 HTR3BO95264 441 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 FADS2O95864 444 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 CSN2P05814 226 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 NFYBP25208 207 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 PRKXP51817 358 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 CDH11P55287 796 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 POU3F1Q03052 451 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 LINC00471Q8N535 108 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 BANPQ8N9N5 519 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 ABHD4Q8TB40 342 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 UBTD2Q8WUN7 234 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 PIMREGQ9BSJ6 248 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 PAK1IP1Q9NWT1 392 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 ABCG2Q9UNQ0 655 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 NFS1Q9Y697 457 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 OR5H15A6NDH6 313 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 EPOPA6NHQ4 379 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 LILRA5A6NI73 299 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 LRRN3E7EW58 273 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 HCRTR1O43613 425 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 GDF9O60383 454 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 SCELO95171 688 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 CLPTM1O96005 669 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 DBHP09172 617 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 GGT1P19440 569 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 AHRP35869 848 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 MLF1P58340 268 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 CCL4L1Q8NHW4 92 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 NELFAQ9H3P2 528 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 DNAJB12Q9NXW2 375 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 CNIH4Q9P003 139 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 FAM230AA0A1W2PPH8 454 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 PMM2O15305 246 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 COX4I1P13073 169 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 CLDN6P56747 220 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 PRDX1Q06830 199 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 TSTQ16762 297 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 REEP3Q6NUK4 255 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 TMEM214Q6NUQ4 689 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 PODNL1Q6PEZ8 512 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 FAM83HQ6ZRV2 1179 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 MKXQ8IYA7 352 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 ZNF184Q99676 751 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 GRHL1Q9NZI5 618 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 KCNN3Q9UGI6 736 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 C14orf166Q9Y224 244 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 TEX51A0A1B0GUA7 166 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 GFYI3L273 518 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 RGS9O75916 674 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 PF4P02776 101 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 CPMP14384 443 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 PTGIRP43119 386 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 NHLH1Q02575 133 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 PUDPQ08623 228 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 ELAVL1Q15717 326 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 MPPED2Q15777 294 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 AGAP6Q5VW22 663 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 NAIF1Q69YI7 327 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 NAGSQ8N159 534 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 SLC6A15Q9H2J7 730 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 MUC13Q9H3R2 512 aa8.6□□□□□ -1.03
LIMCH1-202ENST00000381753 PRSS51A0A1B0GVH4 220 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 SLC22A23A1A5C7 686 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 UNC119BA6NIH7 251 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 CXCR6O00574 342 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 MPZL2O60487 215 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 DIRAS3O95661 229 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 RAB13P51153 203 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 NEDD8Q15843 81 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 FXNQ16595 210 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 RBM48Q5RL73 367 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 RHEBL1Q8TAI7 183 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 DNAJA4Q8WW22 397 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 MTHFD2LQ9H903 347 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 SLC35F4A4IF30 521 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 OR2J2O76002 312 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 PROCP04070 461 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 ETFAP13804 333 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 PRKCDQ05655 676 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 NADSYN1Q6IA69 706 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 SLC18B1Q6NT16 456 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 CLEC14AQ86T13 490 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 PEX13Q92968 403 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 GPATCH2Q9NW75 528 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 SLC6A5Q9Y345 797 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 J3QLW9 94 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 NKX2-8O15522 239 aa8.59□□□□□ -1.03
LIMCH1-202ENST00000381753 SBK2P0C263 348 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms