RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 TPBGQ13641 420 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 PLK5Q496M5 336 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 CCBE1Q6UXH8 406 aaPredicted RBP12.42□□□□□ -0.42
CCDC3-202ENST00000378839 THSD4Q6ZMP0 1018 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 ABHD13Q7L211 337 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 VASH1Q7L8A9 365 aaPredicted RBP12.42□□□□□ -0.42
CCDC3-202ENST00000378839 TRIM48Q8IWZ4 208 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 CAMKVQ8NCB2 501 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 NLGN4YQ8NFZ3 816 aaPredicted RBP12.42□□□□□ -0.42
CCDC3-202ENST00000378839 OR4N2Q8NGD1 307 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 RIPOR3Q96MK2 946 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 ISG20L2Q9H9L3 353 aaKnown RBP12.42□□□□□ -0.42
CCDC3-202ENST00000378839 LYRM4Q9HD34 91 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 ABCB9Q9NP78 766 aa12.42□□□□□ -0.42
CCDC3-202ENST00000378839 STK25O00506 426 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 SEMA4FO95754 770 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 CBX7O95931 251 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 ST6GAL1P15907 406 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 AZGP1P25311 298 aaKnown RBP12.41□□□□□ -0.42
CCDC3-202ENST00000378839 MRPS21P82921 87 aaKnown RBP12.41□□□□□ -0.42
CCDC3-202ENST00000378839 C1DQ13901 141 aaKnown RBP12.41□□□□□ -0.42
CCDC3-202ENST00000378839 OR1Q1Q15612 314 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 SMUG1Q53HV7 270 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 RRM2BQ7LG56 351 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 ABI3BPQ7Z7G0 1075 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 CPOQ8IVL8 374 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 ZNF619Q8N2I2 560 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 SCAIQ8N9R8 606 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 OSTF1Q92882 214 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 CTHRC1Q96CG8 243 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 SLC38A2Q96QD8 506 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 KATNB1Q9BVA0 655 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 CAPN10Q9HC96 672 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 KLHL28Q9NXS3 571 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 SIRT4Q9Y6E7 314 aaPredicted RBP12.41□□□□□ -0.42
CCDC3-202ENST00000378839 CDHR4A6H8M9 788 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 RDH16O75452 317 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 SNX4O95219 450 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 GPR75O95800 540 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 IGKV1D-16P01601 117 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 MYL12AP19105 171 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 DRD1P21728 446 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 IFNGR2P38484 337 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 RFX2P48378 723 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 CCINQ13939 588 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 FCRLBQ6BAA4 426 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 QSOX2Q6ZRP7 698 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 LAPTM4BQ86VI4 370 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 CSNK1A1LQ8N752 337 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 ARIH2OSQ8N7S6 290 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 OR9A4Q8NGU2 314 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 SMAP2Q8WU79 429 aaPredicted RBP12.41□□□□□ -0.42
CCDC3-202ENST00000378839 C1GALT1C1Q96EU7 318 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 MEPEQ9NQ76 525 aaPredicted RBP12.41□□□□□ -0.42
CCDC3-202ENST00000378839 DTX4Q9Y2E6 619 aa12.41□□□□□ -0.42
CCDC3-202ENST00000378839 A8MV72 311 aaPredicted RBP12.4□□□□□ -0.42
CCDC3-202ENST00000378839 PLOD3O60568 738 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 NCR1O76036 304 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 PTTG1O95997 202 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 TSPAN19P0C672 248 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 S1PR1P21453 382 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 TLX1P31314 330 aaPredicted RBP12.4□□□□□ -0.42
CCDC3-202ENST00000378839 AKT2P31751 481 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 GABRA3P34903 492 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 FZD2Q14332 565 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 SLC35F1Q5T1Q4 408 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 KLHL3Q9UH77 587 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 TRAPPC4Q9Y296 219 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 EXOGQ9Y2C4 368 aaKnown RBP12.4□□□□□ -0.42
CCDC3-202ENST00000378839 CDH10Q9Y6N8 788 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 IQCMA0A1B0GVH7 501 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 C2orf74A8MZ97 194 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 BHLHE40O14503 412 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 THBS1P07996 1170 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 NID1P14543 1247 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 IL9P15248 144 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 GCGRP47871 477 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 YPEL5P62699 121 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 ILF3Q12906 894 aaKnown RBP eCLIP12.4□□□□□ -0.42
CCDC3-202ENST00000378839 GLYR1Q49A26 553 aaPredicted RBP12.4□□□□□ -0.42
CCDC3-202ENST00000378839 CRTC2Q53ET0 693 aaPredicted RBP12.4□□□□□ -0.42
CCDC3-202ENST00000378839 NXNL2Q5VZ03 156 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 PLBD1Q6P4A8 553 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 IL17RDQ8NFM7 739 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 NR4A3Q92570 626 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 RERGQ96A58 199 aaPredicted RBP12.4□□□□□ -0.42
CCDC3-202ENST00000378839 SRRQ9GZT4 340 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 OR52D1Q9H346 318 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 TIGARQ9NQ88 270 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 A0A0J9YY10 115 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 LINC00854A0A1B0GVQ3 168 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 SLC35F4A4IF30 521 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 C2CD4DB7Z1M9 353 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 STX11O75558 287 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 IGHA1P01876 353 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 NGFRP08138 427 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 BMP8BP34820 402 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 EMDP50402 254 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 CD200R1LQ6Q8B3 271 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 SLC44A3Q8N4M1 653 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms