RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 GGNQ86UU5 652 aa19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 GTPBP8Q8N3Z3 284 aaPredicted RBP19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 FNDC9Q8TBE3 224 aa19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 ADAMTS15Q8TE58 950 aa19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 SMPDL3BQ92485 455 aa19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 MOAP1Q96BY2 351 aa19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 DACH2Q96NX9 599 aa19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 SORT1Q99523 831 aa19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 CENPHQ9H3R5 247 aa19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 LIME1Q9H400 295 aa19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 AKTIPQ9H8T0 292 aa19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 RNF122Q9H9V4 155 aa19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 STOML1Q9UBI4 398 aa19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 TEP1Q99973 2627 aaKnown RBP19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 NUP214P35658 2090 aaPredicted RBP19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 GOSR1O95249 250 aa19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 TUBBP07437 444 aa19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 PSMA4P25789 261 aaKnown RBP19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 KIR2DL2P43627 348 aaPredicted RBP19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 SLC1A6P48664 564 aa19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 PCYT1AP49585 367 aa19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 RPL14P50914 215 aaKnown RBP19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 HBA1P69905 142 aa19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 PON3Q15166 354 aa19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 CD226Q15762 336 aa19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 VWA1Q6PCB0 445 aa19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 BTLAQ7Z6A9 289 aa19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 CROCCP2Q86T23 111 aa19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 CNEP1R1Q8N9A8 125 aa19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 ZBTB8AQ96BR9 441 aa19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 SH3YL1Q96HL8 342 aaPredicted RBP19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 PPP1R36Q96LQ0 422 aa19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 NPAS1Q99742 590 aa19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 HOXD1Q9GZZ0 328 aa19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 MED17Q9NVC6 651 aa19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 ST6GALNAC2Q9UJ37 374 aa19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 HAO1Q9UJM8 370 aa19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 KCNE3Q9Y6H6 103 aa19.52■□□□□ 0.72
CCDC28B-201ENST00000373602 CFLARO15519 480 aa19.51■□□□□ 0.71
CCDC28B-201ENST00000373602 CD1EP15812 388 aa19.51■□□□□ 0.71
CCDC28B-201ENST00000373602 ATP6V1C1P21283 382 aa19.51■□□□□ 0.71
CCDC28B-201ENST00000373602 PGS1Q32NB8 556 aa19.51■□□□□ 0.71
CCDC28B-201ENST00000373602 PLPPR5Q32ZL2 321 aa19.51■□□□□ 0.71
CCDC28B-201ENST00000373602 DCST2Q5T1A1 773 aa19.51■□□□□ 0.71
CCDC28B-201ENST00000373602 MTERF4Q7Z6M4 381 aaKnown RBP19.51■□□□□ 0.71
CCDC28B-201ENST00000373602 WDR75Q8IWA0 830 aaKnown RBP19.51■□□□□ 0.71
CCDC28B-201ENST00000373602 KIRREL3Q8IZU9 778 aa19.51■□□□□ 0.71
CCDC28B-201ENST00000373602 B4GALNT2Q8NHY0 566 aa19.51■□□□□ 0.71
CCDC28B-201ENST00000373602 PGM2Q96G03 612 aa19.51■□□□□ 0.71
CCDC28B-201ENST00000373602 KCNK9Q9NPC2 374 aa19.51■□□□□ 0.71
CCDC28B-201ENST00000373602 AKAP6Q13023 2319 aa19.5■□□□□ 0.71
CCDC28B-201ENST00000373602 SMNDC1O75940 238 aaKnown RBP eCLIP19.5■□□□□ 0.71
CCDC28B-201ENST00000373602 BGNP21810 368 aa19.5■□□□□ 0.71
CCDC28B-201ENST00000373602 CPOXP36551 454 aa19.5■□□□□ 0.71
CCDC28B-201ENST00000373602 ZNF41P51814 821 aaPredicted RBP19.5■□□□□ 0.71
CCDC28B-201ENST00000373602 RAC1P63000 192 aa19.5■□□□□ 0.71
CCDC28B-201ENST00000373602 FGFBP1Q14512 234 aa19.5■□□□□ 0.71
CCDC28B-201ENST00000373602 GUSBP1Q15486 140 aa19.5■□□□□ 0.71
CCDC28B-201ENST00000373602 SGCBQ16585 318 aa19.5■□□□□ 0.71
CCDC28B-201ENST00000373602 KLHL26Q53HC5 615 aa19.5■□□□□ 0.71
CCDC28B-201ENST00000373602 OR4F3Q6IEY1 312 aa19.5■□□□□ 0.71
CCDC28B-201ENST00000373602 BHLHB9Q6PI77 547 aa19.5■□□□□ 0.71
CCDC28B-201ENST00000373602 OR5AK3PQ8NH89 298 aa19.5■□□□□ 0.71
CCDC28B-201ENST00000373602 POC1BQ8TC44 478 aa19.5■□□□□ 0.71
CCDC28B-201ENST00000373602 ADGRG7Q96K78 797 aa19.5■□□□□ 0.71
CCDC28B-201ENST00000373602 KLHDC3Q9BQ90 382 aa19.5■□□□□ 0.71
CCDC28B-201ENST00000373602 NPIPA5A0A0B4J1W7 369 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 SH3D21A4FU49 640 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 NPIPA7E9PJI5 369 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 EIF1AYO14602 144 aaKnown RBP19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 AQP8O94778 261 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 CGAP01215 116 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 NPIPA8P0DM63 369 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 FCGR2AP12318 317 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 EIF1AXP47813 144 aaKnown RBP19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 ATP12AP54707 1039 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 SIRPAP78324 504 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 ZNF117Q03924 483 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 FAM27E3Q08E93 113 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 STX3Q13277 289 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 CTU2Q2VPK5 515 aaKnown RBP19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 ZNF474Q6S9Z5 364 aaPredicted RBP19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 LRRC34Q8IZ02 419 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 CLECL1Q8IZS7 167 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 ZNF527Q8NB42 609 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 OR8J2Q8NGG1 315 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 OR10D3Q8NH80 312 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 PHOSPHO1Q8TCT1 267 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 ZBTB9Q96C00 473 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 RNF145Q96MT1 663 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 OR7D2Q96RA2 312 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 FOXC2Q99958 501 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 CCM2LQ9NUG4 571 aaPredicted RBP19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 EDARQ9UNE0 448 aa19.49■□□□□ 0.71
CCDC28B-201ENST00000373602 ESPNB1AK53 854 aa19.48■□□□□ 0.71
CCDC28B-201ENST00000373602 NPIPB9F8W1W9 429 aa19.48■□□□□ 0.71
CCDC28B-201ENST00000373602 RNASET2O00584 256 aaKnown RBP19.48■□□□□ 0.71
CCDC28B-201ENST00000373602 ADAMDEC1O15204 470 aa19.48■□□□□ 0.71
CCDC28B-201ENST00000373602 LINGO3P0C6S8 592 aa19.48■□□□□ 0.71
CCDC28B-201ENST00000373602 CD8BP10966 210 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms