RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 TMUB1Q9BVT8 246 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 MROQ9BYG7 248 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 NPFFR1Q9GZQ6 430 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 SCPEP1Q9HB40 452 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 FBXO6Q9NRD1 293 aaPredicted RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 ABHD10Q9NUJ1 306 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 AIG1Q9NVV5 245 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 DAPK2Q9UIK4 370 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 KLHL21Q9UJP4 597 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 A0A0B4J293 547 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 H7BY64 318 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 GAPDHSO14556 408 aaPredicted RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 LILRA1O75019 489 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 FADS2O95864 444 aaKnown RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 CALCAP01258 141 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 ATXN1LP0C7T5 689 aaKnown RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 ZNF23P17027 643 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 EDNRBP24530 442 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 PCSK6P29122 969 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 GRIA3P42263 894 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 CBLBQ13191 982 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 CMPK2Q5EBM0 449 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 LRRC73Q5JTD7 316 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 CLLU1OSQ5K130 101 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 MARCH8Q5T0T0 291 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 KIAA1614Q5VZ46 1190 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 TRIQKQ629K1 86 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 MORN4Q8NDC4 146 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 OR10X1Q8NGY0 326 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 OR4F5Q8NH21 305 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 OR51F2Q8NH61 342 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 STOML3Q8TAV4 291 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 STT3BQ8TCJ2 826 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 SCRN2Q96FV2 425 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 SLC45A3Q96JT2 553 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 PRAP1Q96NZ9 151 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 FCRL5Q96RD9 977 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 AGAP2Q99490 1192 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 MGME1Q9BQP7 344 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 ABCG8Q9H221 673 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 RHOJQ9H4E5 214 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 METTL8Q9H825 291 aaKnown RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 CRLF2Q9HC73 371 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 RHBDL2Q9NX52 303 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 C14orf166Q9Y224 244 aaKnown RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 CARD8Q9Y2G2 431 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 RNF115Q9Y4L5 304 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 CAMTA1Q9Y6Y1 1673 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 A0A0J9YYE9 177 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 PAPSS1O43252 624 aaPredicted RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 SCAF4O95104 1147 aaKnown RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 TGFAP01135 160 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 F13BP05160 661 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 PVRP15151 417 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 ACADSP16219 412 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 MEOX1P50221 254 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 NKX6-1P78426 367 aaPredicted RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 MSMO1Q15800 293 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 SWI5Q1ZZU3 235 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 PCGF3Q3KNV8 242 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 FAM74A1Q5RGS3 127 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 DCAF12L2Q5VW00 463 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 ZBTB49Q6ZSB9 765 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 CD163Q86VB7 1156 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 ZNF761Q86XN6 746 aaPredicted RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 BBS10Q8TAM1 723 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 BAHD1Q8TBE0 780 aaPredicted RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 AP3S1Q92572 193 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 DTD2Q96FN9 168 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 ADOQ96SZ5 270 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 GPATCH1Q9BRR8 931 aaKnown RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 NDFIP1Q9BT67 221 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 TMEM100Q9NV29 134 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 C1orf109Q9NX04 203 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 FADS2P1A8MWK0 482 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 ANKRD63C9JTQ0 380 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 C5orf67F2Z3F1 127 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 ACOX3O15254 700 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 CAPNS1P04632 268 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 CRHP06850 196 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 SBK2P0C263 348 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 OR4E1P0C645 316 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 ITIH1P19827 911 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 PTAFRP25105 342 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 CSN1S1P47710 185 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 RGS19P49795 217 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 RAB38P57729 211 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 NUTF2P61970 127 aaKnown RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 PPP1CBP62140 327 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 TLE1Q04724 770 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 GABPB1Q06547 395 aaPredicted RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 AQP6Q13520 282 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 RSU1Q15404 277 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 SSX2Q16385 188 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 DEFB110Q30KQ9 67 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 GTDC1Q4AE62 458 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 IFI44LQ53G44 452 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 TMEM196Q5HYL7 178 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 CXorf66Q5JRM2 361 aaPredicted RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 DLK2Q6UY11 383 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms