RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 FGF11Q92914 225 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 ORAI1Q96D31 301 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 OTUB2Q96DC9 234 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 HHIPL1Q96JK4 782 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 MED18Q9BUE0 208 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 MED28Q9H204 178 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 COQ3Q9NZJ6 369 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 ADAM30Q9UKF2 790 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 CHD9Q3L8U1 2897 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 H3BSH0 61 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 EFCAB14O75071 495 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 LDB3O75112 727 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 SLC25A35Q3KQZ1 300 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 CDC73Q6P1J9 531 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 SLC48A1Q6P1K1 146 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 ZNF765Q7L2R6 523 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 ARL14Q8N4G2 192 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 OR2L5Q8NG80 312 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 OR52L1Q8NGH7 329 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 OR13C2Q8NGS9 318 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 OR10G6Q8NH81 332 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 OR14C36Q8NHC7 312 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 FANK1Q8TC84 345 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 ZFAND1Q8TCF1 268 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 COX14Q96I36 57 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 PRKAG2Q9UGJ0 569 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 NCKAP1Q9Y2A7 1128 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 CEP290O15078 2479 aa11.31□□□□□ -0.6
CLIP3-201ENST00000360535 PEX12O00623 359 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 TOXO94900 526 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 DRD5P21918 477 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 AK4P27144 223 aaPredicted RBP11.3□□□□□ -0.6
CLIP3-201ENST00000360535 TEAD1P28347 426 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 PYCR1P32322 319 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 OR12D2P58182 307 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 SGCGQ13326 291 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 SF3A2Q15428 464 aaKnown RBP11.3□□□□□ -0.6
CLIP3-201ENST00000360535 TRMT12Q53H54 448 aaKnown RBP11.3□□□□□ -0.6
CLIP3-201ENST00000360535 EOGTQ5NDL2 527 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 VASNQ6EMK4 673 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 KIAA1211LQ6NV74 962 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 ANKRD54Q6NXT1 300 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 GET4Q7L5D6 327 aaPredicted RBP11.3□□□□□ -0.6
CLIP3-201ENST00000360535 ARIH2OSQ8N7S6 290 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 POGLUT1Q8NBL1 392 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 OR2L3Q8NG85 312 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 OR5W2Q8NH69 310 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 AKAP1Q92667 903 aaKnown RBP eCLIP11.3□□□□□ -0.6
CLIP3-201ENST00000360535 RFT1Q96AA3 541 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 PAK6Q9NQU5 681 aaPredicted RBP11.3□□□□□ -0.6
CLIP3-201ENST00000360535 SLC23A1Q9UHI7 598 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 CA5BQ9Y2D0 317 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 PCDHGB7Q9Y5F8 929 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 ARHGEF17Q96PE2 2063 aaPredicted RBP11.3□□□□□ -0.6
CLIP3-201ENST00000360535 A0A0A6YYJ9 748 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 PSMD9O00233 223 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 RGS9O75916 674 aaPredicted RBP11.3□□□□□ -0.6
CLIP3-201ENST00000360535 PEPDP12955 493 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 MAKP20794 623 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 HLA-DMAP28067 261 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 MAPK14Q16539 360 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 DUSP5Q16690 384 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 FAM78AQ5JUQ0 283 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 RNLSQ5VYX0 342 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 PRSS45Q7RTY3 260 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 HCAR2Q8TDS4 363 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 C4orf36Q96KX1 117 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 ACTRT3Q9BYD9 372 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 BABAM2Q9NXR7 383 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 ZNF443Q9Y2A4 671 aaPredicted RBP11.3□□□□□ -0.6
CLIP3-201ENST00000360535 EYSQ5T1H1 3165 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 TBX19O60806 448 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 TRAPPC2P0DI81 140 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 TRAPPC2BP0DI82 140 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 TFPIP10646 304 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 HTR1FP30939 366 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 HSD17B2P37059 387 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 STAT5AP42229 794 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 CLDN20P56880 219 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 NTRK2Q16620 822 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 CLPPQ16740 277 aaPredicted RBP11.3□□□□□ -0.6
CLIP3-201ENST00000360535 TMEM52BQ4KMG9 183 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 PRPF38BQ5VTL8 546 aaKnown RBP11.3□□□□□ -0.6
CLIP3-201ENST00000360535 SDE2Q6IQ49 451 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 ZNF836Q6ZNA1 936 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 ELMOD2Q8IZ81 293 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 OR8H3Q8N146 312 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 IL17RCQ8NAC3 791 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 C17orf47Q8NEP4 570 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 DNAJA4Q8WW22 397 aaPredicted RBP11.3□□□□□ -0.6
CLIP3-201ENST00000360535 LCN9Q8WX39 176 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 GCDHQ92947 438 aaPredicted RBP11.3□□□□□ -0.6
CLIP3-201ENST00000360535 CD180Q99467 661 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 GDF15Q99988 308 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 TMEM74BQ9NUR3 256 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 IL20Q9NYY1 176 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 COL4A3Q01955 1670 aa11.3□□□□□ -0.6
CLIP3-201ENST00000360535 LAMP2P13473 410 aa11.29□□□□□ -0.6
CLIP3-201ENST00000360535 SNRPBP14678 240 aaKnown RBP11.29□□□□□ -0.6
CLIP3-201ENST00000360535 MYOGP15173 224 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms