RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 KLHL31Q9H511 634 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 NFKBIL1Q9UBC1 381 aaPredicted RBP20.87■□□□□ 0.93
TRIM28-202ENST00000341753 AUP1Q9Y679 476 aa20.87■□□□□ 0.93
TRIM28-202ENST00000341753 SYNDIG1LA6NDD5 238 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 GPR171O14626 319 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 TBX19O60806 448 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 ANKRD34CP0C6C1 535 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 NPR2P20594 1047 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 PAICSP22234 425 aaKnown RBP20.86■□□□□ 0.93
TRIM28-202ENST00000341753 ACSM1Q08AH1 577 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 CHMP1BQ7LBR1 199 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 OR4D9Q8NGE8 314 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 RSPRY1Q96DX4 576 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 RBP7Q96R05 134 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 CLEC4MQ9H2X3 399 aaPredicted RBP20.86■□□□□ 0.93
TRIM28-202ENST00000341753 BCL2L10Q9HD36 194 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 NLGN3Q9NZ94 848 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 TAS2R38P59533 333 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 ST3GAL3Q11203 375 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 CAMK2DQ13557 499 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 MFSD13AQ14CX5 517 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 DHCR24Q15392 516 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 COL28A1Q2UY09 1125 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 C1orf53Q5VUE5 145 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 CD276Q5ZPR3 534 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 FCRLBQ6BAA4 426 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 PRSS45Q7RTY3 260 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 CACUL1Q86Y37 369 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 ACBD7Q8N6N7 88 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 C17orf47Q8NEP4 570 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 OR8K5Q8NH50 307 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 OR5W2Q8NH69 310 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 TFGQ92734 400 aaPredicted RBP20.86■□□□□ 0.93
TRIM28-202ENST00000341753 KAT2AQ92830 837 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 AICDAQ9GZX7 198 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 ENKD1Q9H0I2 346 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 SAGE1Q9NXZ1 904 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 PPIEQ9UNP9 301 aaKnown RBP20.86■□□□□ 0.93
TRIM28-202ENST00000341753 IRAK3Q9Y616 596 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 NUMA1Q14980 2115 aa20.86■□□□□ 0.93
TRIM28-202ENST00000341753 FCMRO60667 390 aa20.85■□□□□ 0.93
TRIM28-202ENST00000341753 ATF4P18848 351 aaPredicted RBP20.85■□□□□ 0.93
TRIM28-202ENST00000341753 ZNF620Q6ZNG0 422 aa20.85■□□□□ 0.93
TRIM28-202ENST00000341753 KIAA0907Q7Z7F0 614 aaPredicted RBP20.85■□□□□ 0.93
TRIM28-202ENST00000341753 C12orf76Q8N812 135 aaPredicted RBP20.85■□□□□ 0.93
TRIM28-202ENST00000341753 ARSGQ96EG1 525 aa20.85■□□□□ 0.93
TRIM28-202ENST00000341753 SLC38A1Q9H2H9 487 aa20.85■□□□□ 0.93
TRIM28-202ENST00000341753 ERVMER34-1Q9H9K5 563 aa20.85■□□□□ 0.93
TRIM28-202ENST00000341753 IL20Q9NYY1 176 aa20.85■□□□□ 0.93
TRIM28-202ENST00000341753 SLC23A2Q9UGH3 650 aa20.85■□□□□ 0.93
TRIM28-202ENST00000341753 SCML1Q9UN30 329 aa20.85■□□□□ 0.93
TRIM28-202ENST00000341753 NUBP2Q9Y5Y2 271 aa20.85■□□□□ 0.93
TRIM28-202ENST00000341753 DAPL1A0PJW8 107 aa20.85■□□□□ 0.93
TRIM28-202ENST00000341753 SNRPBP14678 240 aaKnown RBP20.85■□□□□ 0.93
TRIM28-202ENST00000341753 CCR8P51685 355 aa20.85■□□□□ 0.93
TRIM28-202ENST00000341753 OR4C11Q6IEV9 310 aa20.85■□□□□ 0.93
TRIM28-202ENST00000341753 OR2T33Q8NG76 320 aa20.85■□□□□ 0.93
TRIM28-202ENST00000341753 MARVELD3Q96A59 401 aa20.85■□□□□ 0.93
TRIM28-202ENST00000341753 ORAI3Q9BRQ5 295 aa20.85■□□□□ 0.93
TRIM28-202ENST00000341753 RBCK1Q9BYM8 510 aa20.85■□□□□ 0.93
TRIM28-202ENST00000341753 OR52A5Q9H2C5 316 aa20.85■□□□□ 0.93
TRIM28-202ENST00000341753 MRPL39Q9NYK5 338 aaKnown RBP20.85■□□□□ 0.93
TRIM28-202ENST00000341753 PRRT4C9JH25 899 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 SPINT1O43278 529 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 NTSP30990 170 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 RGS8P57771 180 aaPredicted RBP20.84■□□□□ 0.93
TRIM28-202ENST00000341753 PIGKQ92643 395 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 YIPF5Q969M3 257 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 OR2M2Q96R28 347 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 TEX12Q9BXU0 123 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 CHIAQ9BZP6 476 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 OTOL1A6NHN0 477 aaPredicted RBP20.84■□□□□ 0.93
TRIM28-202ENST00000341753 TSPAN4O14817 238 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 CASC3O15234 703 aaKnown RBP20.84■□□□□ 0.93
TRIM28-202ENST00000341753 HPXP02790 462 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 GAAP10253 952 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 HOXB3P14651 431 aaPredicted RBP20.84■□□□□ 0.93
TRIM28-202ENST00000341753 SELENOPP49908 381 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 RPS7P62081 194 aaKnown RBP20.84■□□□□ 0.93
TRIM28-202ENST00000341753 GSG1Q2KHT4 349 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 C6orf132Q5T0Z8 1188 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 FAM46CQ5VWP2 391 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 SLC51BQ86UW2 128 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 GRAMD2AQ8IUY3 354 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 NUP210Q8TEM1 1887 aaPredicted RBP20.84■□□□□ 0.93
TRIM28-202ENST00000341753 CNRIP1Q96F85 164 aaPredicted RBP20.84■□□□□ 0.93
TRIM28-202ENST00000341753 OR7D2Q96RA2 312 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 SPRTNQ9H040 489 aaPredicted RBP20.84■□□□□ 0.93
TRIM28-202ENST00000341753 UBQLN3Q9H347 655 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 DLL4Q9NR61 685 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 MARK1Q9P0L2 795 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 UBQLN2Q9UHD9 624 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 FLVCR2Q9UPI3 526 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 A0A0G2JK05 382 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 A0A0G2JPF8 293 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 HNRNPCL2B2RXH8 293 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 HNRNPCL3B7ZW38 293 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 C4orf51C9J302 202 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 HNRNPCL4P0DMR1 293 aa20.84■□□□□ 0.93
TRIM28-202ENST00000341753 FPR3P25089 353 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms