RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 GPANK1O95872 356 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 CPN1P15169 458 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 HOXA11P31270 313 aaPredicted RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 CLCN4P51793 760 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 PRSS12P56730 875 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 TPI1P60174 286 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 GRHL2Q6ISB3 625 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 FIBCD1Q8N539 461 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ADAD1Q96M93 576 aaKnown RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 FBXL2Q9UKC9 423 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 A0A1B0GV72 72 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 PYCARD-AS1I3L0S3 204 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 HLA-DQB1P01920 261 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 TAF6P49848 677 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 RAB1AP62820 205 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 SAPCD1Q5SSQ6 148 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 MBLAC2Q68D91 279 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 CGB2Q6NT52 195 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 H3F3CQ6NXT2 135 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF680Q8NEM1 530 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 SIRT3Q9NTG7 399 aaPredicted RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 CACFD1Q9UGQ2 172 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 COL11A2P13942 1736 aaPredicted RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 CPED1A4D0V7 1026 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ACOT8O14734 319 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 FADS1O60427 444 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 SLCO2B1O94956 709 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 NDUFB10O96000 172 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 LUMP51884 338 aaPredicted RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 PRELPP51888 382 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 TXNDC8Q6A555 127 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 GDF6Q6KF10 455 aaPredicted RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 BEND7Q8N7W2 519 aaPredicted RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 SLC24A4Q8NFF2 622 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF354BQ96LW1 612 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 KCTD7Q96MP8 289 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 GPR52Q9Y2T5 361 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 SLC31A1O15431 190 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 INSIG1O15503 277 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 UBXN7O94888 489 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 HLA-DQA2P01906 255 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 CDK1P06493 297 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 NTHL1P78549 312 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 FNDC3BQ53EP0 1204 aaKnown RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 RTP2Q5QGT7 225 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 FAM46CQ5VWP2 391 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 SMARCD2Q92925 531 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 DCLRE1CQ96SD1 692 aaKnown RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ANKRD19PQ9H560 264 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 FABP12A6NFH5 140 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 QSOX1O00391 747 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 CASKO14936 926 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ALDOBP05062 364 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 DPYSL2Q16555 572 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 DPY19L2P1Q6NXN4 242 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 CHST9Q7L1S5 443 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ARHGAP12Q8IWW6 846 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 OR6J1Q8NGC5 347 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 NETO1Q8TDF5 533 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 GPR22Q99680 433 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ADAT1Q9BUB4 502 aaKnown RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 NIF3L1Q9GZT8 377 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ESRP2Q9H6T0 727 aaKnown RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 CEBPDP49716 269 aaPredicted RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 IGFBP7Q16270 282 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 OXLD1Q5BKU9 147 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 FAHD2BQ6P2I3 314 aaPredicted RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 METTL7BQ6UX53 244 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 LRRC69Q6ZNQ3 347 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 FAHD2AQ96GK7 314 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 SPG21Q9NZD8 308 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 IL5P05113 134 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 NR2C1P13056 603 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 IGFALSP35858 605 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 RAB11BQ15907 218 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 MRNIPQ6NTE8 343 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 MARCH9Q86YJ5 346 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 M0R233 179 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 PPP1R2P9O14990 202 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 OTCP00480 354 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 SNRNP70P08621 437 aaKnown RBP3.34□□□□□ -1.87
SYNE1-201ENST00000341594 HGFP14210 728 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ISCA2Q86U28 154 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 FAM129CQ86XR2 697 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 OR13D1Q8NGV5 346 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 OLIG1Q8TAK6 271 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 HLA-CQ95604 372 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 PTDSS2Q9BVG9 487 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 BTBD1Q9H0C5 482 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ASB6Q9NWX5 421 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 ASIC5Q9NY37 505 aa3.34□□□□□ -1.87
SYNE1-201ENST00000341594 LOC102723532A0A0G2JNH3 316 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 BTBD17A6NE02 478 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 HPGDSO60760 199 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 SPI1P17947 270 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 MC4RP32245 332 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 SP2Q02086 613 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF616Q08AN1 781 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF599Q96NL3 588 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 TRIM2Q9C040 744 aa3.34□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms