RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 MLLT3P42568 568 aaPredicted RBP11.8□□□□□ -0.52
LIG1-201ENST00000263274 HCCSP53701 268 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 MLF2Q15773 248 aaPredicted RBP11.8□□□□□ -0.52
LIG1-201ENST00000263274 PRPF38BQ5VTL8 546 aaKnown RBP11.8□□□□□ -0.52
LIG1-201ENST00000263274 ABHD17CQ6PCB6 329 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 ESPNLQ6ZVH7 1005 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 CDK20Q8IZL9 346 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 OR4M1Q8NGD0 313 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 OR13C5Q8NGS8 318 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 ZNF671Q8TAW3 534 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 LCN9Q8WX39 176 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 OTUB2Q96DC9 234 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 LINC00615Q96LM1 132 aaPredicted RBP11.8□□□□□ -0.52
LIG1-201ENST00000263274 FAM83CQ9BQN1 747 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 THAP7Q9BT49 309 aaPredicted RBP11.8□□□□□ -0.52
LIG1-201ENST00000263274 AICDAQ9GZX7 198 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 PHPT1Q9NRX4 125 aaPredicted RBP11.8□□□□□ -0.52
LIG1-201ENST00000263274 NDOR1Q9UHB4 597 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 TBX21Q9UL17 535 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 TRAV27A0A087WT01 109 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 FABP7O15540 132 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 LANCL1O43813 399 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 EFCAB14O75071 495 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 HMGN1P05114 100 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 CLUP10909 449 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 DRD5P21918 477 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 HSD17B2P37059 387 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 RPA4Q13156 261 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 ARHGAP19Q14CB8 494 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 FCN2Q15485 313 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 CDH24Q86UP0 819 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 OR8H3Q8N146 312 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 PFN4Q8NHR9 129 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 AKAP1Q92667 903 aaKnown RBP eCLIP11.8□□□□□ -0.52
LIG1-201ENST00000263274 RFT1Q96AA3 541 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 RIPOR3Q96MK2 946 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 CD180Q99467 661 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 TMEM43Q9BTV4 400 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 KCNN2Q9H2S1 579 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 UBQLN3Q9H347 655 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 SLC28A3Q9HAS3 691 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 WASH6PQ9NQA3 447 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 PRKAG2Q9UGJ0 569 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 MAFFQ9ULX9 164 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 CHST2Q9Y4C5 530 aa11.8□□□□□ -0.52
LIG1-201ENST00000263274 TBC1D3DA0A087WVF3 549 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 TBC1D3IA0A087WXS9 549 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 TBC1D3EA0A087X179 549 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 TBC1D3KA0A087X1G2 549 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 TBC1D3FA6NER0 549 aaPredicted RBP11.79□□□□□ -0.52
LIG1-201ENST00000263274 A8MUA0 341 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 TBC1D3LB9A6J9 549 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 CASC3O15234 703 aaKnown RBP11.79□□□□□ -0.52
LIG1-201ENST00000263274 SURF4O15260 269 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 NFATC1O95644 943 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 DHFRP00374 187 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 TBC1D3HP0C7X1 549 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 NT5EP21589 574 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 RRAS2P62070 204 aaPredicted RBP11.79□□□□□ -0.52
LIG1-201ENST00000263274 ZNF658BQ4V348 819 aaPredicted RBP11.79□□□□□ -0.52
LIG1-201ENST00000263274 TBC1D3GQ6DHY5 549 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 TBC1D3CQ6IPX1 549 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 FAM111BQ6SJ93 734 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 ZNF322Q6U7Q0 402 aaPredicted RBP11.79□□□□□ -0.52
LIG1-201ENST00000263274 TBC1D3Q8IZP1 549 aaPredicted RBP11.79□□□□□ -0.52
LIG1-201ENST00000263274 TMIEQ8NEW7 156 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 TOR1AIP2Q8NFQ8 470 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 ANGPTL6Q8NI99 470 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 FANK1Q8TC84 345 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 SPRTNQ9H040 489 aaPredicted RBP11.79□□□□□ -0.52
LIG1-201ENST00000263274 RNF32Q9H0A6 362 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 ENKD1Q9H0I2 346 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 SERGEFQ9UGK8 458 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 SIRT4Q9Y6E7 314 aaPredicted RBP11.79□□□□□ -0.52
LIG1-201ENST00000263274 CENPVL1A0A0U1RR11 272 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 LDB3O75112 727 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 GZMKP49863 264 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 DPTQ07507 201 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 GPR176Q14439 515 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 SF3A2Q15428 464 aaKnown RBP11.79□□□□□ -0.52
LIG1-201ENST00000263274 NTRK2Q16620 822 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 ANKRD54Q6NXT1 300 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 OR2L5Q8NG80 312 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 RELTQ969Z4 430 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 HCAR1Q9BXC0 346 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 PPIL3Q9H2H8 161 aaKnown RBP11.79□□□□□ -0.52
LIG1-201ENST00000263274 WSB2Q9NYS7 404 aaPredicted RBP11.79□□□□□ -0.52
LIG1-201ENST00000263274 APOBEC3BQ9UH17 382 aaKnown RBP11.79□□□□□ -0.52
LIG1-201ENST00000263274 PRR23D1E9PI22 279 aaPredicted RBP11.79□□□□□ -0.52
LIG1-201ENST00000263274 E9PI62 339 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 PSMD9O00233 223 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 PROM1O43490 865 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 RNF13O43567 381 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 ZNF888P0CJ79 500 aaPredicted RBP11.79□□□□□ -0.52
LIG1-201ENST00000263274 PRR23D2P0DMB1 279 aaPredicted RBP11.79□□□□□ -0.52
LIG1-201ENST00000263274 AK4P27144 223 aaPredicted RBP11.79□□□□□ -0.52
LIG1-201ENST00000263274 OMPP47874 163 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 ATP12AP54707 1039 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 YIF1BQ5BJH7 314 aa11.79□□□□□ -0.52
LIG1-201ENST00000263274 GPR135Q8IZ08 494 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms