RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 ERVK-25P63136 954 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 ADAMTS14Q8WXS8 1223 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 PLD4Q96BZ4 506 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 C4orf36Q96KX1 117 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 SLC25A18Q9H1K4 315 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 BABAM2Q9NXR7 383 aa13.42□□□□□ -0.26
SDC1-201ENST00000254351 KHDRBS3O75525 346 aaKnown RBP13.41□□□□□ -0.26
SDC1-201ENST00000254351 ELNP15502 786 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 RBMS1P29558 406 aaKnown RBP13.41□□□□□ -0.26
SDC1-201ENST00000254351 PPP2R1BP30154 601 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 SMIM11AP58511 58 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 SP140Q13342 867 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 TCEA2Q15560 299 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 ETFDHQ16134 617 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 SHEQ5VZ18 495 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 C1orf94Q6P1W5 598 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 APOOLQ6UXV4 268 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 CCDC116Q8IYX3 515 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 ARL14Q8N4G2 192 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 NEURL3Q96EH8 262 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 ADAT1Q9BUB4 502 aaKnown RBP13.41□□□□□ -0.26
SDC1-201ENST00000254351 SHARPINQ9H0F6 387 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 HPF1Q9NWY4 346 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 COL4A4P53420 1690 aaPredicted RBP13.41□□□□□ -0.26
SDC1-201ENST00000254351 H7BY64 318 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 CDC42EP2O14613 210 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 HMGA1P17096 107 aaKnown RBP13.41□□□□□ -0.26
SDC1-201ENST00000254351 HSD3B2P26439 372 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 FZD5Q13467 585 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 SPOUT1Q5T280 376 aaKnown RBP13.41□□□□□ -0.26
SDC1-201ENST00000254351 PYHIN1Q6K0P9 492 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 CDC73Q6P1J9 531 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 CXXC5Q7LFL8 322 aaKnown RBP13.41□□□□□ -0.26
SDC1-201ENST00000254351 RFLNBQ8N5W9 214 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 ZNF296Q8WUU4 475 aaPredicted RBP13.41□□□□□ -0.26
SDC1-201ENST00000254351 RFKQ969G6 155 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 SLC35G5Q96KT7 338 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 PRAP1Q96NZ9 151 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 KLF16Q9BXK1 252 aaPredicted RBP13.41□□□□□ -0.26
SDC1-201ENST00000254351 MYNNQ9NPC7 610 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 COPZ2Q9P299 210 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 P2RX2Q9UBL9 471 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 PHF11Q9UIL8 331 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 CBLCQ9ULV8 474 aa13.41□□□□□ -0.26
SDC1-201ENST00000254351 AGAP14A8MT82 685 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 MTRF1O75570 445 aaKnown RBP13.4□□□□□ -0.26
SDC1-201ENST00000254351 PRKAR2AP13861 404 aaKnown RBP13.4□□□□□ -0.26
SDC1-201ENST00000254351 NFYAP23511 347 aaPredicted RBP13.4□□□□□ -0.26
SDC1-201ENST00000254351 HOXC8P31273 242 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 ADH7P40394 386 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 CCR8P51685 355 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 NCBP2P52298 156 aaKnown RBP eCLIP13.4□□□□□ -0.26
SDC1-201ENST00000254351 SNRPD1P62314 119 aaKnown RBP13.4□□□□□ -0.26
SDC1-201ENST00000254351 PDE7AQ13946 482 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 ACSM3Q53FZ2 586 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 ZNF311Q5JNZ3 666 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 NHLRC3Q5JS37 347 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 ACBD7Q8N6N7 88 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 ABHD4Q8TB40 342 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 CHFRQ96EP1 664 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 LRIG1Q96JA1 1093 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 DPH7Q9BTV6 452 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 FKRPQ9H9S5 495 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 MARCH5Q9NX47 278 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 TAC3Q9UHF0 121 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 MRTO4Q9UKD2 239 aaKnown RBP13.4□□□□□ -0.26
SDC1-201ENST00000254351 IRAK3Q9Y616 596 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 SCN8AQ9UQD0 1980 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 MEIS3P1A6NDR6 274 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 BET1O15155 118 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 PEX14O75381 377 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 RLN1P04808 185 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 C21orf58P58505 322 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 TMEM115Q12893 351 aaPredicted RBP13.4□□□□□ -0.26
SDC1-201ENST00000254351 RPE65Q16518 533 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 TP53I3Q53FA7 332 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 BEX5Q5H9J7 111 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 ZNF697Q5TEC3 545 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 HDDC2Q7Z4H3 204 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 CBARPQ8N350 705 aaPredicted RBP13.4□□□□□ -0.26
SDC1-201ENST00000254351 CPXM2Q8N436 756 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 OR11G2Q8NGC1 345 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 OR5M1Q8NGP8 315 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 DPH1Q9BZG8 443 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 OR2AG1Q9H205 316 aa13.4□□□□□ -0.26
SDC1-201ENST00000254351 OR2W5A6NFC9 320 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 LRRN3E7EW58 273 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 NPC1O15118 1278 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 SURF4O15260 269 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 TMPRSS11DO60235 418 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 SLCO2B1O94956 709 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 HMGN2P05204 90 aaKnown RBP13.39□□□□□ -0.27
SDC1-201ENST00000254351 RFX3P48380 749 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 LGALS3BPQ08380 585 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 ELOAQ14241 798 aaKnown RBP13.39□□□□□ -0.27
SDC1-201ENST00000254351 PAQR7Q86WK9 346 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 SDR16C5Q8N3Y7 309 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 OR56A3Q8NH54 315 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 CYB5D2Q8WUJ1 264 aa13.39□□□□□ -0.27
SDC1-201ENST00000254351 GHSRQ92847 366 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms