RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 ZNF542PQ5EBM4 170 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 ALG10BQ5I7T1 473 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 FAM182AQ5T1J6 154 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 WDR53Q7Z5U6 358 aaPredicted RBP12.03□□□□□ -0.48
USP40-201ENST00000251722 KIAA0907Q7Z7F0 614 aaPredicted RBP12.03□□□□□ -0.48
USP40-201ENST00000251722 ZNF561Q8N587 486 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 TCEANCQ8N8B7 351 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 OR5L1Q8NGL2 311 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 SPRYD4Q8WW59 207 aaPredicted RBP12.03□□□□□ -0.48
USP40-201ENST00000251722 LRRN3Q9H3W5 708 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 LHX3Q9UBR4 397 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 EIF1AYO14602 144 aaKnown RBP12.03□□□□□ -0.48
USP40-201ENST00000251722 SDC3O75056 442 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 NDUFB2O95178 105 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 RASAL1O95294 804 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 IL1RNP18510 177 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 PCGF2P35227 344 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 APLNRP35414 380 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 EIF1AXP47813 144 aaKnown RBP12.03□□□□□ -0.48
USP40-201ENST00000251722 RAB38P57729 211 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 GPLD1P80108 840 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 TSTQ16762 297 aaKnown RBP12.03□□□□□ -0.48
USP40-201ENST00000251722 SPIN3Q5JUX0 258 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 ETFRF1Q6IPR1 90 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 OR5AR1Q8NGP9 310 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 ACSS1Q9NUB1 689 aaPredicted RBP12.03□□□□□ -0.48
USP40-201ENST00000251722 ZNF223Q9UK11 482 aaPredicted RBP12.03□□□□□ -0.48
USP40-201ENST00000251722 GGT3PA6NGU5 568 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 GCGRP47871 477 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 VASPP50552 380 aaPredicted RBP12.03□□□□□ -0.48
USP40-201ENST00000251722 C4orf46Q504U0 113 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 RNASE12Q5GAN4 147 aaKnown RBP12.03□□□□□ -0.48
USP40-201ENST00000251722 GPR26Q8NDV2 337 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 OR5K2Q8NHB8 316 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 TUBB1Q9H4B7 451 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 ZBTB20Q9HC78 741 aaPredicted RBP12.03□□□□□ -0.48
USP40-201ENST00000251722 TREX1Q9NSU2 369 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 NDRG3Q9UGV2 375 aa12.03□□□□□ -0.48
USP40-201ENST00000251722 TJP1Q07157 1748 aa12.02□□□□□ -0.48
USP40-201ENST00000251722 ZBTB42B2RXF5 422 aa12.02□□□□□ -0.48
USP40-201ENST00000251722 UCHL1P09936 223 aa12.02□□□□□ -0.48
USP40-201ENST00000251722 PKDCCQ504Y2 493 aa12.02□□□□□ -0.48
USP40-201ENST00000251722 LINC00469Q8N7U9 141 aa12.02□□□□□ -0.48
USP40-201ENST00000251722 WACQ9BTA9 647 aa12.02□□□□□ -0.48
USP40-201ENST00000251722 PAPOLGQ9BWT3 736 aaKnown RBP12.02□□□□□ -0.48
USP40-201ENST00000251722 PCED1AQ9H1Q7 454 aa12.02□□□□□ -0.48
USP40-201ENST00000251722 HEBP1Q9NRV9 189 aa12.02□□□□□ -0.48
USP40-201ENST00000251722 VNN2O95498 520 aa12.02□□□□□ -0.48
USP40-201ENST00000251722 DIRAS3O95661 229 aa12.02□□□□□ -0.48
USP40-201ENST00000251722 CHRM5P08912 532 aaPredicted RBP12.02□□□□□ -0.48
USP40-201ENST00000251722 ZNF888P0CJ79 500 aaPredicted RBP12.02□□□□□ -0.48
USP40-201ENST00000251722 GGT1P19440 569 aa12.02□□□□□ -0.48
USP40-201ENST00000251722 AOAHP28039 575 aa12.02□□□□□ -0.48
USP40-201ENST00000251722 GCH1P30793 250 aa12.02□□□□□ -0.48
USP40-201ENST00000251722 DIO3P55073 304 aa12.02□□□□□ -0.48
USP40-201ENST00000251722 CTBSQ01459 385 aa12.02□□□□□ -0.48
USP40-201ENST00000251722 ZNF704Q6ZNC4 412 aaPredicted RBP12.02□□□□□ -0.48
USP40-201ENST00000251722 TAS1R1Q7RTX1 841 aa12.02□□□□□ -0.48
USP40-201ENST00000251722 PROKR1Q8TCW9 393 aa12.02□□□□□ -0.48
USP40-201ENST00000251722 ZNF597Q96LX8 424 aa12.02□□□□□ -0.48
USP40-201ENST00000251722 ANKRD60Q9BZ19 345 aa12.02□□□□□ -0.48
USP40-201ENST00000251722 ZFP57Q9NU63 452 aa12.02□□□□□ -0.48
USP40-201ENST00000251722 C14orf119Q9NWQ9 140 aa12.02□□□□□ -0.48
USP40-201ENST00000251722 ASH2LQ9UBL3 628 aa12.02□□□□□ -0.48
USP40-201ENST00000251722 MYH13Q9UKX3 1938 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 ANHXE9PGG2 379 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 C11orf98E9PRG8 122 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 G0S2P27469 103 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 EPHA4P54764 986 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 EEF1A1P68104 462 aaKnown RBP12.02□□□□□ -0.49
USP40-201ENST00000251722 CHRNEQ04844 493 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 EEF1A2Q05639 463 aaKnown RBP12.02□□□□□ -0.49
USP40-201ENST00000251722 EEF1A1P5Q5VTE0 462 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 NANPQ8TBE9 248 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 PRRX2Q99811 253 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 PBDC1Q9BVG4 233 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 ACAD8Q9UKU7 415 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 MYH6P13533 1939 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 LATO43561 262 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 ACPPP15309 386 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 SIM1P81133 766 aaPredicted RBP12.02□□□□□ -0.49
USP40-201ENST00000251722 RPE65Q16518 533 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 LCN8Q6JVE9 175 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 PHTF2Q8N3S3 785 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 ST8SIA2Q92186 375 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 SLC41A3Q96GZ6 507 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 SECISBP2Q96T21 854 aaKnown RBP12.02□□□□□ -0.49
USP40-201ENST00000251722 CUTCQ9NTM9 273 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 MARCH5Q9NX47 278 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 ANKRD36CQ5JPF3 1778 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 TEX13DA0A0J9YY54 714 aaPredicted RBP12.02□□□□□ -0.49
USP40-201ENST00000251722 A0A1B0GVT2 93 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 PCP4P48539 62 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 CCR5P51681 352 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 BCL7AQ4VC05 210 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 LANCL3Q6ZV70 420 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 OR9I1Q8NGQ6 314 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 TMEM19Q96HH6 336 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 MAP6Q96JE9 813 aa12.02□□□□□ -0.49
USP40-201ENST00000251722 LRFN5Q96NI6 719 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms