RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 GFYI3L273 518 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 SOX30O94993 753 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 FBXO45P0C2W1 286 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 MSL3P1P0C860 447 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 TYRP14679 529 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 PTH2RP49190 550 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 TAS2R38P59533 333 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 FKBP1BP68106 108 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 BTN3A2P78410 334 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 TEKQ02763 1124 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 PRKCZQ05513 592 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 PGGHGQ32M88 737 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 FAM71E1Q6IPT2 247 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 FAAP20Q6NZ36 180 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 TRAM1L1Q8N609 369 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 OR13C5Q8NGS8 318 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 OR56B4Q8NH76 319 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 SLC41A3Q96GZ6 507 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 TMEM175Q9BSA9 504 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 MARVELD1Q9BSK0 173 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 NOX3Q9HBY0 568 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 MED31Q9Y3C7 131 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 NPIPA5A0A0B4J1W7 369 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 KANTRA0A1W2PQU2 76 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 C1orf226A1L170 272 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 NPIPA7E9PJI5 369 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 FZD6O60353 706 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 OR10H2O60403 315 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 PEX14O75381 377 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 OR6A2O95222 327 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 C1orf105O95561 183 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 NPIPA8P0DM63 369 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 AHCYP23526 432 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 MC3RP41968 323 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 CLDN2P57739 230 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 ZNF33BQ06732 778 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 PON3Q15166 354 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 TECPR1Q7Z6L1 1165 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 RTN4RL1Q86UN2 441 aaPredicted RBP10.35□□□□□ -0.75
CLN3-244ENST00000636147 TMPRSS12Q86WS5 348 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 REM2Q8IYK8 340 aaPredicted RBP10.35□□□□□ -0.75
CLN3-244ENST00000636147 PGBD3Q8N328 593 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 ZNF454Q8N9F8 522 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 ZDHHC1Q8WTX9 485 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 SUSD6Q92537 303 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 GHSRQ92847 366 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 NUS1Q96E22 293 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 MS4A4AQ96JQ5 239 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 WSB2Q9NYS7 404 aaPredicted RBP10.35□□□□□ -0.75
CLN3-244ENST00000636147 KCNK6Q9Y257 313 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 FARSAQ9Y285 508 aaKnown RBP10.35□□□□□ -0.75
CLN3-244ENST00000636147 OR10H1Q9Y4A9 318 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 SPAG17Q6Q759 2223 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 KCNE1BA0A087WTH5 132 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 MANSC4A6NHS7 340 aaPredicted RBP10.35□□□□□ -0.75
CLN3-244ENST00000636147 UNC119BA6NIH7 251 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 CDK2AP1O14519 115 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 FFAR1O14842 300 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 NUDT14O95848 222 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 NAT2P11245 290 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 SOX9P48436 509 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 BTG1P62324 171 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 DSC1Q08554 894 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 C19orf57Q0VDD7 668 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 HTR4Q13639 388 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 CCNJQ5T5M9 372 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 METTL11BQ5VVY1 283 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 ZNF627Q7L945 461 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 NKAIN4Q8IVV8 208 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 GPALPP1Q8IXQ4 340 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 HDDC3Q8N4P3 179 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 ADAMTS14Q8WXS8 1223 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 UCN3Q969E3 161 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 OR52D1Q9H346 318 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 MCCC2Q9HCC0 563 aa10.35□□□□□ -0.75
CLN3-244ENST00000636147 NOP16Q9Y3C1 178 aaKnown RBP10.35□□□□□ -0.75
CLN3-244ENST00000636147 LEFTY2O00292 366 aa10.34□□□□□ -0.75
CLN3-244ENST00000636147 CA12O43570 354 aa10.34□□□□□ -0.75
CLN3-244ENST00000636147 RBBP9O75884 186 aa10.34□□□□□ -0.75
CLN3-244ENST00000636147 SOD1P00441 154 aa10.34□□□□□ -0.75
CLN3-244ENST00000636147 GTF2F2P13984 249 aa10.34□□□□□ -0.75
CLN3-244ENST00000636147 VAMP1P23763 118 aa10.34□□□□□ -0.75
CLN3-244ENST00000636147 UBE2MP61081 183 aaKnown RBP10.34□□□□□ -0.75
CLN3-244ENST00000636147 RAE1P78406 368 aaKnown RBP10.34□□□□□ -0.75
CLN3-244ENST00000636147 SPAG16Q8N0X2 631 aa10.34□□□□□ -0.75
CLN3-244ENST00000636147 C9orf62Q8N4C0 152 aa10.34□□□□□ -0.75
CLN3-244ENST00000636147 MS4A15Q8N5U1 240 aa10.34□□□□□ -0.75
CLN3-244ENST00000636147 CHST4Q8NCG5 386 aa10.34□□□□□ -0.75
CLN3-244ENST00000636147 GPR32P1Q8NGA4 272 aa10.34□□□□□ -0.75
CLN3-244ENST00000636147 OR52E2Q8NGJ4 325 aa10.34□□□□□ -0.75
CLN3-244ENST00000636147 ORAI1Q96D31 301 aa10.34□□□□□ -0.75
CLN3-244ENST00000636147 MSLNLQ96KJ4 702 aa10.34□□□□□ -0.75
CLN3-244ENST00000636147 HSPA12BQ96MM6 686 aa10.34□□□□□ -0.75
CLN3-244ENST00000636147 MFFQ9GZY8 342 aa10.34□□□□□ -0.75
CLN3-244ENST00000636147 IL36AQ9UHA7 158 aa10.34□□□□□ -0.75
CLN3-244ENST00000636147 FBXL2Q9UKC9 423 aa10.34□□□□□ -0.75
CLN3-244ENST00000636147 INSL5Q9Y5Q6 135 aa10.34□□□□□ -0.75
CLN3-244ENST00000636147 LRRC37AA6NMS7 1700 aa10.34□□□□□ -0.75
CLN3-244ENST00000636147 A0A0B4J293 547 aa10.34□□□□□ -0.75
CLN3-244ENST00000636147 GOSR2O14653 212 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms