RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 SIKE1Q9BRV8 207 aa15.31■□□□□ 0.04
TRIM28-215ENST00000601150 UGT2B28Q9BY64 529 aa15.31■□□□□ 0.04
TRIM28-215ENST00000601150 RMND5AQ9H871 391 aa15.31■□□□□ 0.04
TRIM28-215ENST00000601150 NPHS2Q9NP85 383 aa15.31■□□□□ 0.04
TRIM28-215ENST00000601150 EXD2Q9NVH0 621 aa15.31■□□□□ 0.04
TRIM28-215ENST00000601150 ALKBH4Q9NXW9 302 aa15.31■□□□□ 0.04
TRIM28-215ENST00000601150 A0A1W2PQD3 144 aa15.3■□□□□ 0.04
TRIM28-215ENST00000601150 GSNP06396 782 aa15.3■□□□□ 0.04
TRIM28-215ENST00000601150 DCTP40126 519 aa15.3■□□□□ 0.04
TRIM28-215ENST00000601150 CASP9P55211 416 aa15.3■□□□□ 0.04
TRIM28-215ENST00000601150 FLYWCH1Q4VC44 716 aa15.3■□□□□ 0.04
TRIM28-215ENST00000601150 TIGD2Q4W5G0 525 aa15.3■□□□□ 0.04
TRIM28-215ENST00000601150 ATAD3BQ5T9A4 648 aa15.3■□□□□ 0.04
TRIM28-215ENST00000601150 TNFAIP8L2Q6P589 184 aaPredicted RBP15.3■□□□□ 0.04
TRIM28-215ENST00000601150 B3GNT6Q6ZMB0 384 aa15.3■□□□□ 0.04
TRIM28-215ENST00000601150 C16orf62Q7Z3J2 963 aa15.3■□□□□ 0.04
TRIM28-215ENST00000601150 MISPQ8IVT2 679 aa15.3■□□□□ 0.04
TRIM28-215ENST00000601150 ULK2Q8IYT8 1036 aa15.3■□□□□ 0.04
TRIM28-215ENST00000601150 RPRMLQ8N4K4 120 aa15.3■□□□□ 0.04
TRIM28-215ENST00000601150 THOC1Q96FV9 657 aaKnown RBP15.3■□□□□ 0.04
TRIM28-215ENST00000601150 PRDM14Q9GZV8 571 aa15.3■□□□□ 0.04
TRIM28-215ENST00000601150 COQ3Q9NZJ6 369 aa15.3■□□□□ 0.04
TRIM28-215ENST00000601150 DCTN4Q9UJW0 460 aa15.3■□□□□ 0.04
TRIM28-215ENST00000601150 CAMK2AQ9UQM7 478 aa15.3■□□□□ 0.04
TRIM28-215ENST00000601150 FAM215AQ9Y5M1 114 aa15.3■□□□□ 0.04
TRIM28-215ENST00000601150 SETXQ7Z333 2677 aaKnown RBP15.3■□□□□ 0.04
TRIM28-215ENST00000601150 AHRRA9YTQ3 701 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 ZIC3O60481 467 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 STX11O75558 287 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 OR12D1P0DN82 309 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 HK1P19367 917 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 TCEA1P23193 301 aaKnown RBP15.29■□□□□ 0.04
TRIM28-215ENST00000601150 CHMP24386 653 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 ANXA11P50995 505 aaKnown RBP15.29■□□□□ 0.04
TRIM28-215ENST00000601150 ATP4BP51164 291 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 ATP12AP54707 1039 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 GFRA1P56159 465 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 NUP107P57740 925 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 TXNL4AP83876 142 aaKnown RBP15.29■□□□□ 0.04
TRIM28-215ENST00000601150 PMPCAQ10713 525 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 ART3Q13508 389 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 SF3B4Q15427 424 aaKnown RBP eCLIP15.29■□□□□ 0.041e-12■■■■□ 21.2
TRIM28-215ENST00000601150 ARHGAP11BQ3KRB8 267 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 DCST1Q5T197 706 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 RTL6Q6ICC9 239 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 HEPHL1Q6MZM0 1159 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 AAGABQ6PD74 315 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 ENPP6Q6UWR7 440 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 GATSQ8NAP1 163 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 RFWD2Q8NHY2 731 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 XAGE5Q8WWM1 108 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 RND1Q92730 232 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 RAB8BQ92930 207 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 VPS33AQ96AX1 596 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 C1GALT1C1Q96EU7 318 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 WDYHV1Q96HA8 205 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 SFXN2Q96NB2 322 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 TTYH2Q9BSA4 534 aa15.29■□□□□ 0.04
TRIM28-215ENST00000601150 RPH3AQ9Y2J0 694 aaPredicted RBP15.29■□□□□ 0.04
TRIM28-215ENST00000601150 MED12Q93074 2177 aa15.28■□□□□ 0.04
TRIM28-215ENST00000601150 NPIPA5A0A0B4J1W7 369 aa15.28■□□□□ 0.04
TRIM28-215ENST00000601150 NPIPA7E9PJI5 369 aa15.28■□□□□ 0.04
TRIM28-215ENST00000601150 NPIPB9F8W1W9 429 aa15.28■□□□□ 0.04
TRIM28-215ENST00000601150 H3BNH8 94 aa15.28■□□□□ 0.04
TRIM28-215ENST00000601150 ANP32DO95626 131 aa15.28■□□□□ 0.04
TRIM28-215ENST00000601150 KRT75O95678 551 aa15.28■□□□□ 0.04
TRIM28-215ENST00000601150 C1QCP02747 245 aa15.28■□□□□ 0.04
TRIM28-215ENST00000601150 ZCCHC18P0CG32 403 aa15.28■□□□□ 0.04
TRIM28-215ENST00000601150 NPIPA8P0DM63 369 aa15.28■□□□□ 0.04
TRIM28-215ENST00000601150 GLI4P10075 376 aa15.28■□□□□ 0.04
TRIM28-215ENST00000601150 CPN1P15169 458 aa15.28■□□□□ 0.04
TRIM28-215ENST00000601150 MSX1P28360 303 aa15.28■□□□□ 0.04
TRIM28-215ENST00000601150 B3GALT5-AS1P59052 145 aa15.28■□□□□ 0.04
TRIM28-215ENST00000601150 RCAN2Q14206 197 aa15.28■□□□□ 0.04
TRIM28-215ENST00000601150 SQLEQ14534 574 aa15.28■□□□□ 0.04
TRIM28-215ENST00000601150 GLYR1Q49A26 553 aaPredicted RBP15.28■□□□□ 0.04
TRIM28-215ENST00000601150 KLHL26Q53HC5 615 aa15.28■□□□□ 0.04
TRIM28-215ENST00000601150 DNAJC14Q6Y2X3 702 aaPredicted RBP15.28■□□□□ 0.04
TRIM28-215ENST00000601150 MTERF4Q7Z6M4 381 aaKnown RBP15.28■□□□□ 0.04
TRIM28-215ENST00000601150 RNF130Q86XS8 419 aa15.28■□□□□ 0.04
TRIM28-215ENST00000601150 SDCCAG3Q96C92 435 aa15.28■□□□□ 0.04
TRIM28-215ENST00000601150 NMUR2Q9GZQ4 415 aa15.28■□□□□ 0.04
TRIM28-215ENST00000601150 TMEM45AQ9NWC5 275 aa15.28■□□□□ 0.04
TRIM28-215ENST00000601150 TRIM33Q9UPN9 1127 aa15.28■□□□□ 0.04
TRIM28-215ENST00000601150 A0A0G2JND7 137 aa15.27■□□□□ 0.04
TRIM28-215ENST00000601150 FAM47E-STBD1D6RA91 191 aa15.27■□□□□ 0.04
TRIM28-215ENST00000601150 GMFGO60234 142 aa15.27■□□□□ 0.04
TRIM28-215ENST00000601150 CLDN14O95500 239 aa15.27■□□□□ 0.04
TRIM28-215ENST00000601150 GUSBP08236 651 aa15.27■□□□□ 0.04
TRIM28-215ENST00000601150 TROVE2P10155 538 aaKnown RBP eCLIP15.27■□□□□ 0.04
TRIM28-215ENST00000601150 MAGEA8P43361 318 aa15.27■□□□□ 0.04
TRIM28-215ENST00000601150 CD226Q15762 336 aa15.27■□□□□ 0.04
TRIM28-215ENST00000601150 ZNF630Q2M218 657 aaPredicted RBP15.27■□□□□ 0.04
TRIM28-215ENST00000601150 ACSF3Q4G176 576 aaPredicted RBP15.27■□□□□ 0.04
TRIM28-215ENST00000601150 C6orf10Q5SRN2 563 aa15.27■□□□□ 0.04
TRIM28-215ENST00000601150 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.27■□□□□ 0.04
TRIM28-215ENST00000601150 RAET1LQ5VY80 246 aa15.27■□□□□ 0.04
TRIM28-215ENST00000601150 BLOC1S3Q6QNY0 202 aa15.27■□□□□ 0.04
TRIM28-215ENST00000601150 FUNDC1Q8IVP5 155 aa15.27■□□□□ 0.04
TRIM28-215ENST00000601150 PHOSPHO1Q8TCT1 267 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms