RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 ADAMTSL4Q6UY14 1074 aa19.27■□□□□ 0.68
UPF1-207ENST00000599848 SLC37A3Q8NCC5 494 aa19.27■□□□□ 0.68
UPF1-207ENST00000599848 STEAP2Q8NFT2 490 aa19.27■□□□□ 0.68
UPF1-207ENST00000599848 OR56B2PQ8NGI1 322 aa19.27■□□□□ 0.68
UPF1-207ENST00000599848 MAFAQ8NHW3 353 aaPredicted RBP19.27■□□□□ 0.68
UPF1-207ENST00000599848 PMS2P1A4D2B8 440 aa19.27■□□□□ 0.67
UPF1-207ENST00000599848 CREBL2O60519 120 aaPredicted RBP19.27■□□□□ 0.67
UPF1-207ENST00000599848 TPOP07202 933 aa19.27■□□□□ 0.67
UPF1-207ENST00000599848 PRKXP51817 358 aa19.27■□□□□ 0.67
UPF1-207ENST00000599848 CHRNEQ04844 493 aa19.27■□□□□ 0.67
UPF1-207ENST00000599848 C6orf132Q5T0Z8 1188 aa19.27■□□□□ 0.67
UPF1-207ENST00000599848 IL20RBQ6UXL0 311 aa19.27■□□□□ 0.67
UPF1-207ENST00000599848 LRRTM3Q86VH5 581 aa19.27■□□□□ 0.67
UPF1-207ENST00000599848 LILRB2Q8N423 598 aa19.27■□□□□ 0.67
UPF1-207ENST00000599848 DNAJC22Q8N4W6 341 aa19.27■□□□□ 0.67
UPF1-207ENST00000599848 BARD1Q99728 777 aaKnown RBP19.27■□□□□ 0.67
UPF1-207ENST00000599848 B4DXG7 233 aa19.27■□□□□ 0.67
UPF1-207ENST00000599848 F5H5K5 113 aa19.27■□□□□ 0.67
UPF1-207ENST00000599848 MAN2A2P49641 1150 aa19.27■□□□□ 0.67
UPF1-207ENST00000599848 EFNA3P52797 238 aa19.27■□□□□ 0.67
UPF1-207ENST00000599848 GSG1LQ6UXU4 331 aa19.27■□□□□ 0.67
UPF1-207ENST00000599848 NRMQ8IXM6 262 aa19.27■□□□□ 0.67
UPF1-207ENST00000599848 OR5B12Q96R08 314 aa19.27■□□□□ 0.67
UPF1-207ENST00000599848 IER2Q9BTL4 223 aa19.27■□□□□ 0.67
UPF1-207ENST00000599848 ELOVL3Q9HB03 270 aa19.27■□□□□ 0.67
UPF1-207ENST00000599848 ZNF337Q9Y3M9 751 aa19.27■□□□□ 0.67
UPF1-207ENST00000599848 IFNA4P05014 189 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 CTHP32929 405 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 AAED1Q7RTV5 226 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 SLC16A14Q7RTX9 510 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 OR5D14Q8NGL3 314 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 SPPL3Q8TCT6 385 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 OR6C1Q96RD1 312 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 ARNT2Q9HBZ2 717 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 TM7SF3Q9NS93 570 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 MARCH4Q9P2E8 410 aaPredicted RBP19.26■□□□□ 0.67
UPF1-207ENST00000599848 PRKACBP22694 351 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 KIAA1024LP59773 190 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 OLIG2Q13516 323 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 MSMO1Q15800 293 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 LRRC26Q2I0M4 334 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 OR52R1Q8NGF1 315 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 AP1S3Q96PC3 154 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 WACQ9BTA9 647 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 ETS2P15036 469 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 CDKN2CP42773 168 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 GPR4P46093 362 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 TANGO2Q6ICL3 276 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 BLOC1S3Q6QNY0 202 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 SLC35F2Q8IXU6 374 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 WDR83Q9BRX9 315 aaKnown RBP19.26■□□□□ 0.67
UPF1-207ENST00000599848 PBDC1Q9BVG4 233 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 MLXQ9UH92 298 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 NOSIPQ9Y314 301 aaKnown RBP19.26■□□□□ 0.67
UPF1-207ENST00000599848 EEF1E1-BLOC1S5C9J1V9 151 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 H3BSH0 61 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 EEF1E1O43324 174 aaKnown RBP19.26■□□□□ 0.67
UPF1-207ENST00000599848 CPMP14384 443 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 APOFQ13790 326 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 SLC22A10Q63ZE4 541 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 GLYATL2Q8WU03 294 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 INTS14Q96SY0 518 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 CCDC32Q9BV29 185 aa19.26■□□□□ 0.67
UPF1-207ENST00000599848 CACNG3O60359 315 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 RRAS2P62070 204 aaPredicted RBP19.25■□□□□ 0.67
UPF1-207ENST00000599848 CLDN10P78369 228 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 VEZF1Q14119 521 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 ZNF517Q6ZMY9 492 aaPredicted RBP19.25■□□□□ 0.67
UPF1-207ENST00000599848 SLC7A13Q8TCU3 470 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 TMEM239Q8WW34 195 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 FUBP1Q96AE4 644 aaKnown RBP19.25■□□□□ 0.67
UPF1-207ENST00000599848 FCRL3Q96P31 734 aaPredicted RBP19.25■□□□□ 0.67
UPF1-207ENST00000599848 TMEM185BQ9H7F4 350 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 KCNK12Q9HB15 430 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 CLCA1A8K7I4 914 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 HIST1H1TP22492 207 aaPredicted RBP19.25■□□□□ 0.67
UPF1-207ENST00000599848 SLC6A11P48066 632 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 F2RL1P55085 397 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 ADARB1P78563 741 aaKnown RBP19.25■□□□□ 0.67
UPF1-207ENST00000599848 PRDX1Q06830 199 aaKnown RBP19.25■□□□□ 0.67
UPF1-207ENST00000599848 HNRNPA0Q13151 305 aaKnown RBP19.25■□□□□ 0.67
UPF1-207ENST00000599848 MSS51Q4VC12 460 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 ZNF551Q7Z340 670 aaPredicted RBP19.25■□□□□ 0.67
UPF1-207ENST00000599848 KLHDC9Q8NEP7 349 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 CSNK2A3Q8NEV1 391 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 OR51Q1Q8NH59 317 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 LRR1Q96L50 414 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 ZNF446Q9NWS9 450 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 ATXN7L1Q9ULK2 861 aaPredicted RBP19.25■□□□□ 0.67
UPF1-207ENST00000599848 HS3ST2Q9Y278 367 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 CREB1P16220 341 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 CYB561P49447 251 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 CCL11P51671 97 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 MLLT10P55197 1068 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 CDKN2DP55273 166 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 ZNF695Q8IW36 515 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 TCEAL4Q96EI5 215 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 CSNK1G1Q9HCP0 422 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 HAO2Q9NYQ3 351 aa19.25■□□□□ 0.67
UPF1-207ENST00000599848 C4orf47A7E2U8 309 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms