RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 ZNF441Q8N8Z8 693 aa11.09□□□□□ -0.63
SHKBP1-213ENST00000597325 TMEM102Q8N9M5 508 aaPredicted RBP11.09□□□□□ -0.63
SHKBP1-213ENST00000597325 ST6GALNAC3Q8NDV1 305 aa11.09□□□□□ -0.63
SHKBP1-213ENST00000597325 SLC26A7Q8TE54 656 aa11.09□□□□□ -0.63
SHKBP1-213ENST00000597325 UTP4Q969X6 686 aaKnown RBP11.09□□□□□ -0.63
SHKBP1-213ENST00000597325 THOC3Q96J01 351 aaKnown RBP11.09□□□□□ -0.63
SHKBP1-213ENST00000597325 NSMCE2Q96MF7 247 aa11.09□□□□□ -0.63
SHKBP1-213ENST00000597325 ZNF607Q96SK3 696 aa11.09□□□□□ -0.63
SHKBP1-213ENST00000597325 TREX2Q9BQ50 279 aaPredicted RBP11.09□□□□□ -0.63
SHKBP1-213ENST00000597325 PCDHAC1Q9H158 963 aa11.09□□□□□ -0.63
SHKBP1-213ENST00000597325 POLE3Q9NRF9 147 aa11.09□□□□□ -0.63
SHKBP1-213ENST00000597325 MYOTQ9UBF9 498 aa11.09□□□□□ -0.63
SHKBP1-213ENST00000597325 TEKT2Q9UIF3 430 aa11.09□□□□□ -0.63
SHKBP1-213ENST00000597325 POMPQ9Y244 141 aa11.09□□□□□ -0.63
SHKBP1-213ENST00000597325 WDR45Q9Y484 360 aa11.09□□□□□ -0.63
SHKBP1-213ENST00000597325 COL6A5A8TX70 2615 aa11.09□□□□□ -0.63
SHKBP1-213ENST00000597325 A0A0G2JPF8 293 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 ARGFXA6NJG6 315 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 A8MUI8 341 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 HNRNPCL2B2RXH8 293 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 HNRNPCL3B7ZW38 293 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 TO15178 435 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 HS6ST1O60243 411 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 PRKNO60260 465 aaPredicted RBP11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 OR2J2O76002 312 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 KCNK2O95069 426 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 PGM3O95394 542 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 CHRM4P08173 479 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 HNRNPCL4P0DMR1 293 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 CCL11P51671 97 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 FXNQ16595 210 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 FLYWCH1Q4VC44 716 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 MTX3Q5HYI7 312 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 CCNJQ5T5M9 372 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 GLYATQ6IB77 296 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 LRRC74BQ6ZQY2 392 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 GALNT10Q86SR1 603 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 PRR22Q8IZ63 422 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 SLC15A4Q8N697 577 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 BCORP1Q8N888 145 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 BHLHE22Q8NFJ8 381 aaPredicted RBP11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 OR4N2Q8NGD1 307 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 RNF145Q96MT1 663 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 SDF2Q99470 211 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 MDFIQ99750 246 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 SPATA5L1Q9BVQ7 753 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 ZNF350Q9GZX5 532 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 LHPPQ9H008 270 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 ING2Q9H160 280 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 LIN28AQ9H9Z2 209 aaKnown RBP11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 RYDENQ9NUL5 291 aaKnown RBP11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 ACTR3BQ9P1U1 418 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 ABI3Q9P2A4 366 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 SEC16AO15027 2179 aa11.08□□□□□ -0.64
SHKBP1-213ENST00000597325 H0YHG0 523 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 MASP2O00187 686 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 KIAA0513O60268 411 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 ABCB7O75027 752 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 REM1O75628 298 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 SERPINB7O75635 380 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 IL33O95760 270 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 ALPPP05187 535 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 CD99P14209 185 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 ETS2P15036 469 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 ABCD3P28288 659 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 LCN1P31025 176 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 Q0VFX4 171 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 GPR68Q15743 365 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 LCN8Q6JVE9 175 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 CYP2R1Q6VVX0 501 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 RPS19BP1Q86WX3 136 aaKnown RBP11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 PEX5LQ8IYB4 626 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 ZNF619Q8N2I2 560 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 SIRT6Q8N6T7 355 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 ZNF527Q8NB42 609 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 FAM13CQ8NE31 585 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 SPPL2AQ8TCT8 520 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 BRIX1Q8TDN6 353 aaKnown RBP11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 RASSF5Q8WWW0 418 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 ASB15Q8WXK1 588 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 POP5Q969H6 163 aaKnown RBP11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 TMBIM1Q969X1 311 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 EFHD2Q96C19 240 aaPredicted RBP11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 OMA1Q96E52 524 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 RSRC1Q96IZ7 334 aaKnown RBP11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 GORASP2Q9H8Y8 452 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 BCL2L10Q9HD36 194 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 ADPRHL2Q9NX46 363 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 SEC14L3Q9UDX4 400 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 RPS6KA6Q9UK32 745 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 MKLN1Q9UL63 735 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 SAMD4AQ9UPU9 718 aaKnown RBP11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 NTNG1Q9Y2I2 539 aa11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 YARS2Q9Y2Z4 477 aaKnown RBP11.07□□□□□ -0.64
SHKBP1-213ENST00000597325 ZGRF1Q86YA3 2104 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 CSPG4Q6UVK1 2322 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 PRAMEF27A3QJZ7 478 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 ACOT8O14734 319 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 ITGA10O75578 1167 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms