RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 STX5Q13190 355 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 ARHGAP11BQ3KRB8 267 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 FLYWCH1Q4VC44 716 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 EIPR1Q53HC9 387 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 WIPI1Q5MNZ9 446 aaPredicted RBP10.82□□□□□ -0.68
LIG3-213ENST00000590630 C6orf10Q5SRN2 563 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 VASNQ6EMK4 673 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 HEPHL1Q6MZM0 1159 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 TNFAIP8L2Q6P589 184 aaPredicted RBP10.82□□□□□ -0.68
LIG3-213ENST00000590630 BLOC1S3Q6QNY0 202 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 APOOLQ6UXV4 268 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 MTERF4Q7Z6M4 381 aaKnown RBP10.82□□□□□ -0.68
LIG3-213ENST00000590630 IFNEQ86WN2 208 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 RNF130Q86XS8 419 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 OR2M3Q8NG83 312 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 DUSP19Q8WTR2 217 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 PSMG3-AS1Q96PY0 264 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 DMRTA2Q96SC8 542 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 SDF2Q99470 211 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 NMUR2Q9GZQ4 415 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 POLE3Q9NRF9 147 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 PNPLA3Q9NST1 481 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 MRGBPQ9NV56 204 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 CCDC167Q9P0B6 97 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 TNFRSF10DQ9UBN6 386 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 HEATR5AQ86XA9 2040 aa10.82□□□□□ -0.68
LIG3-213ENST00000590630 B4DXG7 233 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 NPIPB9F8W1W9 429 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 H3BNH8 94 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 DYNC1I1O14576 645 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 GSNP06396 782 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 OR12D1P0DN82 309 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 GABRA1P14867 456 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 MSX1P28360 303 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 PTGER4P35408 488 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 DCTP40126 519 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 SMSP52788 366 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 ATP12AP54707 1039 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 CASP9P55211 416 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 AGKQ53H12 422 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 KLHL26Q53HC5 615 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 AP1ARQ63HQ0 302 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 TMEM211Q6ICI0 200 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 ZNF585AQ6P3V2 769 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 AAGABQ6PD74 315 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 DNAJC14Q6Y2X3 702 aaPredicted RBP10.81□□□□□ -0.68
LIG3-213ENST00000590630 C3P1Q6ZMU1 363 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 YRDCQ86U90 279 aaKnown RBP10.81□□□□□ -0.68
LIG3-213ENST00000590630 FUNDC1Q8IVP5 155 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 PM20D2Q8IYS1 436 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 OR5M9Q8NGP3 310 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 ZFP90Q8TF47 636 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 XAGE5Q8WWM1 108 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 OIT3Q8WWZ8 545 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 GTF2H4Q92759 462 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 ABTB1Q969K4 478 aaPredicted RBP10.81□□□□□ -0.68
LIG3-213ENST00000590630 SPDL1Q96EA4 605 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 C1GALT1C1Q96EU7 318 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 TIMP4Q99727 224 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 TMEM120AQ9BXJ8 343 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 ZNF350Q9GZX5 532 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 DSN1Q9H410 356 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 ZNF385DQ9H6B1 395 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 SLC6A13Q9NSD5 602 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 MED11Q9P086 117 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 LIPT1Q9Y234 373 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 SLC6A5Q9Y345 797 aa10.81□□□□□ -0.68
LIG3-213ENST00000590630 C17orf51A8MQB3 221 aa10.8□□□□□ -0.68
LIG3-213ENST00000590630 AHRRA9YTQ3 701 aa10.8□□□□□ -0.68
LIG3-213ENST00000590630 HMGN4O00479 90 aa10.8□□□□□ -0.68
LIG3-213ENST00000590630 NR5A2O00482 541 aa10.8□□□□□ -0.68
LIG3-213ENST00000590630 ZIC3O60481 467 aa10.8□□□□□ -0.68
LIG3-213ENST00000590630 BMP7P18075 431 aa10.8□□□□□ -0.68
LIG3-213ENST00000590630 AGAP20933 346 aa10.8□□□□□ -0.68
LIG3-213ENST00000590630 CHMP24386 653 aa10.8□□□□□ -0.68
LIG3-213ENST00000590630 GFRA1P56159 465 aa10.8□□□□□ -0.68
LIG3-213ENST00000590630 HPCAP84074 193 aa10.8□□□□□ -0.68
LIG3-213ENST00000590630 SF3B4Q15427 424 aaKnown RBP eCLIP10.8□□□□□ -0.682e-10■■■■■ 39.3
LIG3-213ENST00000590630 ZNF630Q2M218 657 aaPredicted RBP10.8□□□□□ -0.68
LIG3-213ENST00000590630 GLYR1Q49A26 553 aaPredicted RBP10.8□□□□□ -0.68
LIG3-213ENST00000590630 XKRXQ6PP77 449 aa10.8□□□□□ -0.68
LIG3-213ENST00000590630 SLC2A7Q6PXP3 512 aa10.8□□□□□ -0.68
LIG3-213ENST00000590630 ENPP6Q6UWR7 440 aa10.8□□□□□ -0.68
LIG3-213ENST00000590630 PIAS4Q8N2W9 510 aaPredicted RBP10.8□□□□□ -0.68
LIG3-213ENST00000590630 ZNF808Q8N4W9 903 aaPredicted RBP10.8□□□□□ -0.68
LIG3-213ENST00000590630 GATSQ8NAP1 163 aa10.8□□□□□ -0.68
LIG3-213ENST00000590630 ITLN2Q8WWU7 325 aaPredicted RBP10.8□□□□□ -0.68
LIG3-213ENST00000590630 RAB8BQ92930 207 aa10.8□□□□□ -0.68
LIG3-213ENST00000590630 ROPN1LQ96C74 230 aa10.8□□□□□ -0.68
LIG3-213ENST00000590630 ZNF317Q96PQ6 595 aaPredicted RBP10.8□□□□□ -0.68
LIG3-213ENST00000590630 TRNT1Q96Q11 434 aaKnown RBP10.8□□□□□ -0.68
LIG3-213ENST00000590630 UGT2B28Q9BY64 529 aa10.8□□□□□ -0.68
LIG3-213ENST00000590630 PRDM14Q9GZV8 571 aa10.8□□□□□ -0.68
LIG3-213ENST00000590630 TPT1P8Q9HAU6 139 aa10.8□□□□□ -0.68
LIG3-213ENST00000590630 SLC52A3Q9NQ40 469 aa10.8□□□□□ -0.68
LIG3-213ENST00000590630 THUMPD1Q9NXG2 353 aaKnown RBP10.8□□□□□ -0.68
LIG3-213ENST00000590630 DTNAQ9Y4J8 743 aa10.8□□□□□ -0.68
LIG3-213ENST00000590630 CELSR2Q9HCU4 2923 aa10.8□□□□□ -0.68
LIG3-213ENST00000590630 DOCK7Q96N67 2140 aa10.79□□□□□ -0.68
LIG3-213ENST00000590630 A0A087WZY1 265 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms