RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 IGKV3-11P04433 115 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 RPSAP08865 295 aaKnown RBP5.72□□□□□ -1.49
LIG3-206ENST00000586058 UBL4AP11441 157 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 CEACAM1P13688 526 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 ZNF28P17035 718 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 GSTM3P21266 225 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 SDHBP21912 280 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 RPS4Y1P22090 263 aaKnown RBP5.72□□□□□ -1.49
LIG3-206ENST00000586058 MMP11P24347 488 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 OTX2P32243 289 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 DLSTP36957 453 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 YAP1P46937 504 aaKnown RBP5.72□□□□□ -1.49
LIG3-206ENST00000586058 SLC6A8P48029 635 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 PNLIPRP2P54317 469 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 SLC26A5P58743 744 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 RNF4P78317 190 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 GABREP78334 506 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 ALDH6A1Q02252 535 aaKnown RBP5.72□□□□□ -1.49
LIG3-206ENST00000586058 MERTKQ12866 999 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 IL18R1Q13478 541 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 DNASE1L3Q13609 305 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 FGFBP1Q14512 234 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 DUSP7Q16829 419 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 MICAQ29983 383 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 EXOC3L2Q2M3D2 409 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 TMEM205Q6UW68 189 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 ZNF730Q6ZMV8 503 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 DGAT2L6Q6ZPD8 337 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 EPHX4Q8IUS5 362 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 C9orf40Q8IXQ3 194 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 CACTIN-AS1Q8N1I8 211 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 SLC5A8Q8N695 610 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 SLC38A9Q8NBW4 561 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 OR52J3Q8NH60 311 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 ZNF563Q8TA94 476 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 SNIP1Q8TAD8 396 aaKnown RBP5.72□□□□□ -1.49
LIG3-206ENST00000586058 PIGXQ8TBF5 258 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 PHOSPHO1Q8TCT1 267 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 DIO2Q92813 273 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 HOXB13Q92826 284 aaPredicted RBP5.72□□□□□ -1.49
LIG3-206ENST00000586058 NACC2Q96BF6 587 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 EFHD2Q96C19 240 aaPredicted RBP5.72□□□□□ -1.49
LIG3-206ENST00000586058 OMA1Q96E52 524 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 RNF31Q96EP0 1072 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 C7orf34Q96L11 122 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 NR1H4Q96RI1 486 aaPredicted RBP5.72□□□□□ -1.49
LIG3-206ENST00000586058 ARHGDIGQ99819 225 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 USB1Q9BQ65 265 aaKnown RBP5.72□□□□□ -1.49
LIG3-206ENST00000586058 NUDT9Q9BW91 350 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 GPR87Q9BY21 358 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 ANKRD60Q9BZ19 345 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 TRIM2Q9C040 744 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 NXF5Q9H1B4 397 aaKnown RBP5.72□□□□□ -1.49
LIG3-206ENST00000586058 RIBC2Q9H4K1 309 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 PAPOLBQ9NRJ5 636 aaKnown RBP5.72□□□□□ -1.49
LIG3-206ENST00000586058 SDHAF3Q9NRP4 125 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 PNPLA3Q9NST1 481 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 NDUFAF4Q9P032 175 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 TEKT2Q9UIF3 430 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 SCOCQ9UIL1 159 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 MGAT4BQ9UQ53 548 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 TMEM5Q9Y2B1 443 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 DTX4Q9Y2E6 619 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 LRRC42Q9Y546 428 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 LYVE1Q9Y5Y7 322 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 KCNE3Q9Y6H6 103 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 EML6Q6ZMW3 1958 aa5.72□□□□□ -1.49
LIG3-206ENST00000586058 HEATR5AQ86XA9 2040 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 IGHV1-45A0A0A0MS14 117 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 NPIPA5A0A0B4J1W7 369 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 IGHV3-20A0A0C4DH32 117 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 SPAARA0A1B0GVQ0 90 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 A0A1W2PQD3 144 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 A0A1W2PRQ8 180 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 PRAMEF27A3QJZ7 478 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 TRAPPC13A5PLN9 417 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 CDHR4A6H8M9 788 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 MAGEA13PA6NCF6 341 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 OR2W5A6NFC9 320 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 SERINC4A6NH21 518 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 PROB1E7EW31 1015 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 NPIPA7E9PJI5 369 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 H3BN98 237 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 J3QL48 77 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 HRKO00198 91 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 BCKDKO14874 412 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 TO15178 435 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 ZNF264O43296 627 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 DENRO43583 198 aaKnown RBP5.71□□□□□ -1.5
LIG3-206ENST00000586058 NDUFB5O43674 189 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 RAD1O60671 282 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 GCM2O75603 506 aaPredicted RBP5.71□□□□□ -1.5
LIG3-206ENST00000586058 SLC25A12O75746 678 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 UTS2O95399 124 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 DLGAP3O95886 979 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 RECKO95980 971 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 ALPLP05186 524 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 UBTFL6P0CB48 400 aaPredicted RBP5.71□□□□□ -1.5
LIG3-206ENST00000586058 NPIPA8P0DM63 369 aa5.71□□□□□ -1.5
LIG3-206ENST00000586058 CT45A8P0DMV1 189 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms