RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 MBD3L5A6NJ08 208 aaPredicted RBP21.63■■□□□ 1.05
SHMT1-206ENST00000579558 GOLGA8NF8WBI6 632 aa21.63■■□□□ 1.05
SHMT1-206ENST00000579558 SCDO00767 359 aa21.63■■□□□ 1.05
SHMT1-206ENST00000579558 DVL2O14641 736 aa21.63■■□□□ 1.05
SHMT1-206ENST00000579558 SOX30O94993 753 aa21.63■■□□□ 1.05
SHMT1-206ENST00000579558 ZNF708P17019 499 aa21.63■■□□□ 1.05
SHMT1-206ENST00000579558 IGFBP2P18065 325 aa21.63■■□□□ 1.05
SHMT1-206ENST00000579558 BMP5P22003 454 aa21.63■■□□□ 1.05
SHMT1-206ENST00000579558 EPHA3P29320 983 aa21.63■■□□□ 1.05
SHMT1-206ENST00000579558 NME5P56597 212 aa21.63■■□□□ 1.05
SHMT1-206ENST00000579558 CLDN18P56856 261 aa21.63■■□□□ 1.05
SHMT1-206ENST00000579558 DPY19L1Q2PZI1 675 aa21.63■■□□□ 1.05
SHMT1-206ENST00000579558 DCST2Q5T1A1 773 aa21.63■■□□□ 1.05
SHMT1-206ENST00000579558 ANXA8L1Q5VT79 327 aa21.63■■□□□ 1.05
SHMT1-206ENST00000579558 SPATA19Q7Z5L4 167 aa21.63■■□□□ 1.05
SHMT1-206ENST00000579558 ANKRD46Q86W74 232 aa21.63■■□□□ 1.05
SHMT1-206ENST00000579558 VPS37AQ8NEZ2 397 aa21.63■■□□□ 1.05
SHMT1-206ENST00000579558 MBD3L2Q8NHZ7 208 aaPredicted RBP21.63■■□□□ 1.05
SHMT1-206ENST00000579558 OR7D2Q96RA2 312 aa21.63■■□□□ 1.05
SHMT1-206ENST00000579558 TREX2Q9BQ50 279 aaPredicted RBP21.63■■□□□ 1.05
SHMT1-206ENST00000579558 AIG1Q9NVV5 245 aa21.63■■□□□ 1.05
SHMT1-206ENST00000579558 KCNE3Q9Y6H6 103 aa21.63■■□□□ 1.05
SHMT1-206ENST00000579558 PCNX3Q9H6A9 2034 aa21.63■■□□□ 1.05
SHMT1-206ENST00000579558 RNF103-CHMP3A0A140T963 221 aa21.62■■□□□ 1.05
SHMT1-206ENST00000579558 CLCA1A8K7I4 914 aa21.62■■□□□ 1.05
SHMT1-206ENST00000579558 E9PBE3 544 aa21.62■■□□□ 1.05
SHMT1-206ENST00000579558 POU3F2P20265 443 aaPredicted RBP21.62■■□□□ 1.05
SHMT1-206ENST00000579558 BCL2A1Q16548 175 aa21.62■■□□□ 1.05
SHMT1-206ENST00000579558 SPANXN4Q5MJ08 99 aa21.62■■□□□ 1.05
SHMT1-206ENST00000579558 ZNF295-AS1Q8N0V1 137 aa21.62■■□□□ 1.05
SHMT1-206ENST00000579558 CLEC4FQ8N1N0 589 aa21.62■■□□□ 1.05
SHMT1-206ENST00000579558 C9orf106Q8NAJ2 232 aa21.62■■□□□ 1.05
SHMT1-206ENST00000579558 RELL2Q8NC24 303 aaPredicted RBP21.62■■□□□ 1.05
SHMT1-206ENST00000579558 OR5M1Q8NGP8 315 aa21.62■■□□□ 1.05
SHMT1-206ENST00000579558 PRSS51A0A1B0GVH4 220 aa21.61■■□□□ 1.05
SHMT1-206ENST00000579558 OR2M5A3KFT3 312 aa21.61■■□□□ 1.05
SHMT1-206ENST00000579558 KLF11O14901 512 aa21.61■■□□□ 1.05
SHMT1-206ENST00000579558 SCN2BO60939 215 aa21.61■■□□□ 1.05
SHMT1-206ENST00000579558 CPSF4O95639 269 aaKnown RBP21.61■■□□□ 1.05
SHMT1-206ENST00000579558 PEPDP12955 493 aa21.61■■□□□ 1.05
SHMT1-206ENST00000579558 S100A3P33764 101 aa21.61■■□□□ 1.05
SHMT1-206ENST00000579558 ZNF136P52737 540 aa21.61■■□□□ 1.05
SHMT1-206ENST00000579558 DGKQP52824 942 aa21.61■■□□□ 1.05
SHMT1-206ENST00000579558 UFM1P61960 85 aa21.61■■□□□ 1.05
SHMT1-206ENST00000579558 RPS26P62854 115 aaKnown RBP21.61■■□□□ 1.05
SHMT1-206ENST00000579558 PHC1P78364 1004 aa21.61■■□□□ 1.05
SHMT1-206ENST00000579558 FAM174BQ3ZCQ3 159 aa21.61■■□□□ 1.05
SHMT1-206ENST00000579558 GLYR1Q49A26 553 aaPredicted RBP21.61■■□□□ 1.05
SHMT1-206ENST00000579558 NXNQ6DKJ4 435 aa21.61■■□□□ 1.05
SHMT1-206ENST00000579558 C6orf120Q7Z4R8 191 aa21.61■■□□□ 1.05
SHMT1-206ENST00000579558 MISPQ8IVT2 679 aa21.61■■□□□ 1.05
SHMT1-206ENST00000579558 UBQLNLQ8IYU4 475 aa21.61■■□□□ 1.05
SHMT1-206ENST00000579558 OR5D16Q8NGK9 328 aa21.61■■□□□ 1.05
SHMT1-206ENST00000579558 GOT1L1Q8NHS2 421 aaPredicted RBP21.61■■□□□ 1.05
SHMT1-206ENST00000579558 ZNF75CPQ92670 426 aaPredicted RBP21.61■■□□□ 1.05
SHMT1-206ENST00000579558 SLC35G5Q96KT7 338 aa21.61■■□□□ 1.05
SHMT1-206ENST00000579558 ATP6V1G3Q96LB4 118 aa21.61■■□□□ 1.05
SHMT1-206ENST00000579558 PIGQQ9BRB3 760 aa21.61■■□□□ 1.05
SHMT1-206ENST00000579558 ZNF629Q9UEG4 869 aaPredicted RBP21.61■■□□□ 1.05
SHMT1-206ENST00000579558 DOCK7Q96N67 2140 aa21.61■■□□□ 1.05
SHMT1-206ENST00000579558 A0A1W2PQD3 144 aa21.6■■□□□ 1.05
SHMT1-206ENST00000579558 LINC01387J3KSC0 135 aa21.6■■□□□ 1.05
SHMT1-206ENST00000579558 MATN1P21941 496 aa21.6■■□□□ 1.05
SHMT1-206ENST00000579558 SSTR2P30874 369 aa21.6■■□□□ 1.05
SHMT1-206ENST00000579558 ARSKQ6UWY0 536 aa21.6■■□□□ 1.05
SHMT1-206ENST00000579558 ADGRE4PQ86SQ3 457 aa21.6■■□□□ 1.05
SHMT1-206ENST00000579558 DMRTC2Q8IXT2 367 aaPredicted RBP21.6■■□□□ 1.05
SHMT1-206ENST00000579558 MEIOBQ8N635 442 aa21.6■■□□□ 1.05
SHMT1-206ENST00000579558 SH3YL1Q96HL8 342 aaPredicted RBP21.6■■□□□ 1.05
SHMT1-206ENST00000579558 TEX37Q96LM6 180 aa21.6■■□□□ 1.05
SHMT1-206ENST00000579558 TM9SF2Q99805 663 aa21.6■■□□□ 1.05
SHMT1-206ENST00000579558 SERHL2Q9H4I8 314 aa21.6■■□□□ 1.05
SHMT1-206ENST00000579558 ARGLU1Q9NWB6 273 aaPredicted RBP21.6■■□□□ 1.05
SHMT1-206ENST00000579558 VDAC3Q9Y277 283 aa21.6■■□□□ 1.05
SHMT1-206ENST00000579558 ZNF337Q9Y3M9 751 aa21.6■■□□□ 1.05
SHMT1-206ENST00000579558 CREBBPQ92793 2442 aa21.59■■□□□ 1.05
SHMT1-206ENST00000579558 NPIPA5A0A0B4J1W7 369 aa21.59■■□□□ 1.05
SHMT1-206ENST00000579558 NPIPA7E9PJI5 369 aa21.59■■□□□ 1.05
SHMT1-206ENST00000579558 H3BML4 177 aa21.59■■□□□ 1.05
SHMT1-206ENST00000579558 NPIPA8P0DM63 369 aa21.59■■□□□ 1.05
SHMT1-206ENST00000579558 TMIGD3P0DMS9 266 aaPredicted RBP21.59■■□□□ 1.05
SHMT1-206ENST00000579558 CTSSP25774 331 aa21.59■■□□□ 1.05
SHMT1-206ENST00000579558 CD226Q15762 336 aa21.59■■□□□ 1.05
SHMT1-206ENST00000579558 FLYWCH1Q4VC44 716 aa21.59■■□□□ 1.05
SHMT1-206ENST00000579558 TTMPQ5BVD1 217 aa21.59■■□□□ 1.05
SHMT1-206ENST00000579558 POMZP3Q6PJE2 187 aa21.59■■□□□ 1.05
SHMT1-206ENST00000579558 PLXDC2Q6UX71 529 aa21.59■■□□□ 1.05
SHMT1-206ENST00000579558 CHMP1BQ7LBR1 199 aa21.59■■□□□ 1.05
SHMT1-206ENST00000579558 GRAMD2AQ8IUY3 354 aa21.59■■□□□ 1.05
SHMT1-206ENST00000579558 ZNF527Q8NB42 609 aa21.59■■□□□ 1.05
SHMT1-206ENST00000579558 PIWIL2Q8TC59 973 aaKnown RBP21.59■■□□□ 1.05
SHMT1-206ENST00000579558 WNT2BQ93097 391 aa21.59■■□□□ 1.05
SHMT1-206ENST00000579558 C14orf79Q96F83 325 aa21.59■■□□□ 1.05
SHMT1-206ENST00000579558 UCN2Q96RP3 112 aa21.59■■□□□ 1.05
SHMT1-206ENST00000579558 HOXD1Q9GZZ0 328 aa21.59■■□□□ 1.05
SHMT1-206ENST00000579558 CLCF1Q9UBD9 225 aa21.59■■□□□ 1.05
SHMT1-206ENST00000579558 GPR45Q9Y5Y3 372 aa21.59■■□□□ 1.05
SHMT1-206ENST00000579558 DUXAA6NLW8 204 aa21.58■■□□□ 1.05
SHMT1-206ENST00000579558 SHISA8B8ZZ34 492 aa21.58■■□□□ 1.05
SHMT1-206ENST00000579558 C9JVG2 144 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms