RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 ABCC12Q96J65 1359 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 MED23Q9ULK4 1368 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 TMEM129A0AVI4 362 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 SH3PXD2BA1X283 911 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 E9PBE3 544 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 RASGRF2O14827 1237 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 NUDT21O43809 227 aaKnown RBP3.95□□□□□ -1.78
NUP88-213ENST00000576862 KIAA0513O60268 411 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 CACNG3O60359 315 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 CRCPO75575 148 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 THY1P04216 161 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 DNAH10OSP0CZ25 163 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 CCDC130P13994 396 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 ZNF3P17036 446 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 PRKACBP22694 351 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 CCND2P30279 289 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 LONP1P36776 959 aaKnown RBP3.95□□□□□ -1.78
NUP88-213ENST00000576862 DHPSP49366 369 aaPredicted RBP3.95□□□□□ -1.78
NUP88-213ENST00000576862 ADARP55265 1226 aaKnown RBP3.95□□□□□ -1.78
NUP88-213ENST00000576862 SNU13P55769 128 aaKnown RBP3.95□□□□□ -1.78
NUP88-213ENST00000576862 MAP3K7CLP57077 242 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 TRA2BP62995 288 aaKnown RBP3.95□□□□□ -1.78
NUP88-213ENST00000576862 GAMTQ14353 236 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 RPS6KA1Q15418 735 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 OR1C1Q15619 314 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 C17orf58Q2M2W7 97 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 HFEQ30201 348 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 LRIT3Q3SXY7 679 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 FUT11Q495W5 492 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 DCAF12Q5T6F0 453 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 LINC00242Q5T6M2 205 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 KCTD11Q693B1 232 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 C8orf74Q6P047 294 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 ZNF589Q86UQ0 364 aaPredicted RBP3.95□□□□□ -1.78
NUP88-213ENST00000576862 ITIH5Q86UX2 942 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 GPD1LQ8N335 351 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 BBS5Q8N3I7 341 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 SAMD12Q8N8I0 201 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 OR1K1Q8NGR3 316 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 URGCPQ8TCY9 931 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 TCP11Q8WWU5 503 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 FAM46BQ96A09 425 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 ESAMQ96AP7 390 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 EEF2KMTQ96G04 330 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 C7orf34Q96L11 122 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 GUCD1Q96NT3 240 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 CATSPER2Q96P56 530 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 RANBP9Q96S59 729 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 AGPAT1Q99943 283 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 DDX50Q9BQ39 737 aaKnown RBP3.95□□□□□ -1.78
NUP88-213ENST00000576862 APOL2Q9BQE5 337 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 RIOK1Q9BRS2 568 aaKnown RBP3.95□□□□□ -1.78
NUP88-213ENST00000576862 ERP44Q9BS26 406 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 NTMT1Q9BV86 223 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 RNPEPL1Q9HAU8 725 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 FAM114A2Q9NRY5 505 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 SPATA7Q9P0W8 599 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 ERVK-19Q9WJR5 959 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 DOT1LQ8TEK3 1739 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 CCDC171Q6TFL3 1326 aa3.95□□□□□ -1.78
NUP88-213ENST00000576862 ABCA7Q8IZY2 2146 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 RFX7Q2KHR2 1363 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 WNK3Q9BYP7 1800 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 A0A1B0GWJ7 208 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 SYCE3A1L190 88 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 NCF1BA6NI72 391 aaPredicted RBP3.94□□□□□ -1.78
NUP88-213ENST00000576862 A8MU10 97 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 NCF1CA8MVU1 366 aaPredicted RBP3.94□□□□□ -1.78
NUP88-213ENST00000576862 HIP1O00291 1037 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 VEGFDO43915 354 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 DUSP11O75319 330 aaKnown RBP3.94□□□□□ -1.78
NUP88-213ENST00000576862 KBTBD11O94819 623 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 STBD1O95210 358 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 CSF2P04141 144 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 B4GALT1P15291 398 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 VCLP18206 1134 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 CCR1P32246 355 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 RFC2P35250 354 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 BLVRAP53004 296 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 KIAA1024LP59773 190 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 IL24Q13007 206 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 DDX39BQ13838 428 aaKnown RBP3.94□□□□□ -1.78
NUP88-213ENST00000576862 DPYSQ14117 519 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 ATAD3CQ5T2N8 411 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 ATAD3BQ5T9A4 648 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 REP15Q6BDI9 236 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 NEK5Q6P3R8 708 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 TMEM126BQ8IUX1 230 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 KDM8Q8N371 416 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 CHDHQ8NE62 594 aaPredicted RBP3.94□□□□□ -1.78
NUP88-213ENST00000576862 OR4F5Q8NH21 305 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 LILRB4Q8NHJ6 448 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 GOLGA5Q8TBA6 731 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 THRSPQ92748 146 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 NCLNQ969V3 563 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 UQCC2Q9BRT2 126 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 UPF3BQ9BZI7 483 aaKnown RBP3.94□□□□□ -1.78
NUP88-213ENST00000576862 POLR1EQ9GZS1 481 aaKnown RBP3.94□□□□□ -1.78
NUP88-213ENST00000576862 VCX3BQ9H321 246 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 HAUS4Q9H6D7 363 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms