RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 NKX2-6A6NCS4 301 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 CD8B2A6NJW9 211 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 H3BNH8 94 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 C19orf84I3L1E1 186 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 LINC01387J3KSC0 135 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 NDUFB5O43674 189 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 FADS1O60427 444 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 KCNK2O95069 426 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 ANGPTL1O95841 491 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 HMGN2P05204 90 aaKnown RBP7.35□□□□□ -1.23
VPS53-214ENST00000572607 ACP2P11117 423 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 PEPDP12955 493 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 TCEA1P23193 301 aaKnown RBP7.35□□□□□ -1.23
VPS53-214ENST00000572607 CHMP24386 653 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 ADH7P40394 386 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 PEX19P40855 299 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 KIR3DL1P43629 444 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 DGKQP52824 942 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 CLNS1AP54105 237 aaKnown RBP7.35□□□□□ -1.23
VPS53-214ENST00000572607 GAS1P54826 345 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 DIO3P55073 304 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 SRYQ05066 204 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 TNP2Q05952 138 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 CDSNQ15517 529 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 DUSP5Q16690 384 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.35□□□□□ -1.23
VPS53-214ENST00000572607 DPY19L1Q2PZI1 675 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 AGBL2Q5U5Z8 902 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 ANXA8L1Q5VT79 327 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 CES4AQ5XG92 561 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 NSUN5P2Q63ZY6 315 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 CDC73Q6P1J9 531 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 P4HA3Q7Z4N8 544 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 CAMKMTQ7Z624 323 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 MARCH3Q86UD3 253 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 MISPQ8IVT2 679 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 ZNF527Q8NB42 609 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 SLC16A11Q8NCK7 471 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 OR2M3Q8NG83 312 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 OR4A15Q8NGL6 344 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 ZPLD1Q8TCW7 415 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 DUSP19Q8WTR2 217 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 RNF138Q8WVD3 245 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 HOXB13Q92826 284 aaPredicted RBP7.35□□□□□ -1.23
VPS53-214ENST00000572607 TLCD1Q96CP7 247 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 NTNG2Q96CW9 530 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 COQ8BQ96D53 544 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 GIMAP5Q96F15 307 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 C16orf58Q96GQ5 468 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 WDYHV1Q96HA8 205 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 ZBTB18Q99592 522 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 PIGQQ9BRB3 760 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 BTBD2Q9BX70 525 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 ACTRT3Q9BYD9 372 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 UCK2Q9BZX2 261 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 C20orf27Q9GZN8 174 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 HOXD1Q9GZZ0 328 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 ACBD3Q9H3P7 528 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 PIGUQ9H490 435 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 CXorf36Q9H7Y0 433 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 MANSC1Q9H8J5 431 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 CALHM2Q9HA72 323 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 MEAF6Q9HAF1 191 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 DUSP22Q9NRW4 184 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 SIRT3Q9NTG7 399 aaPredicted RBP7.35□□□□□ -1.23
VPS53-214ENST00000572607 PNPOQ9NVS9 261 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 GIN1Q9NXP7 522 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 MED11Q9P086 117 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 STOML1Q9UBI4 398 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 MARCOQ9UEW3 520 aaPredicted RBP7.35□□□□□ -1.23
VPS53-214ENST00000572607 Q9UFV3 132 aa7.35□□□□□ -1.23
VPS53-214ENST00000572607 NCOA6Q14686 2063 aaPredicted RBP7.34□□□□□ -1.23
VPS53-214ENST00000572607 A0A087WZY1 265 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 RNF103-CHMP3A0A140T963 221 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 DUXAA6NLW8 204 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 ALG1L2C9J202 215 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 RNASET2O00584 256 aaKnown RBP7.34□□□□□ -1.23
VPS53-214ENST00000572607 HDAC3O15379 428 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 TOXO94900 526 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 OXSR1O95747 527 aaPredicted RBP7.34□□□□□ -1.23
VPS53-214ENST00000572607 AGR2O95994 175 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 NGFRP08138 427 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 KITP10721 976 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 CPN1P15169 458 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 BMP5P22003 454 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 SSTR2P30874 369 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 OPRM1P35372 400 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 TIMP3P35625 211 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 MAP3K8P41279 467 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 ZNF41P51814 821 aaPredicted RBP7.34□□□□□ -1.23
VPS53-214ENST00000572607 GFRA1P56159 465 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 RPS3AP61247 264 aaKnown RBP7.34□□□□□ -1.23
VPS53-214ENST00000572607 GRAMD1BQ3KR37 738 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 OXLD1Q5BKU9 147 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 DCST1Q5T197 706 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 DCST2Q5T1A1 773 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 NXNQ6DKJ4 435 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 OR4F3Q6IEY1 312 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 HDXQ7Z353 690 aa7.34□□□□□ -1.23
VPS53-214ENST00000572607 SPATA19Q7Z5L4 167 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms