RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 OR51F1A6NGY5 319 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 A6NIN4 97 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 ZNF705EA8MWA4 302 aaPredicted RBP10.17□□□□□ -0.78
CLK3-226ENST00000569406 ZNF670-ZNF695F2Z2N8 137 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 H3BNC9 293 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 GFRA2O00451 464 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 DLEU1O43261 78 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 SULT1A3P0DMM9 295 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 SULT1A4P0DMN0 295 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 MST1P26927 711 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 GIFP27352 417 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 SRP9P49458 86 aaKnown RBP10.17□□□□□ -0.78
CLK3-226ENST00000569406 EGR3Q06889 387 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 NPRL3Q12980 569 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 TGIF1Q15583 401 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 MFSD14CQ5VZR4 134 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 ZNF549Q6P9A3 640 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 TMUB2Q71RG4 321 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 TAS1R1Q7RTX1 841 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 GPR149Q86SP6 731 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 TSPAN33Q86UF1 283 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 OR10D4PQ8NGN7 298 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 OR2T11Q8NH01 316 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 THAP3Q8WTV1 239 aaPredicted RBP10.17□□□□□ -0.78
CLK3-226ENST00000569406 NPRL2Q8WTW4 380 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 PIGKQ92643 395 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 MRPL57Q9BQC6 102 aaKnown RBP10.17□□□□□ -0.78
CLK3-226ENST00000569406 ALG8Q9BVK2 526 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 PRKD2Q9BZL6 878 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 SLC6A16Q9GZN6 736 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 SLC25A51Q9H1U9 297 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 CD84Q9UIB8 345 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 SZT2Q5T011 3432 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 OBSL1O75147 1896 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 KIAA1671Q9BY89 1806 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 MCRIP1C9JLW8 97 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 CD3GP09693 182 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 SLC35G4P0C7Q5 338 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 GGT1P19440 569 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 TBXA2RP21731 343 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 RGS4P49798 205 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 ACVR1Q04771 509 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 PLEKHN1Q494U1 663 aaPredicted RBP10.17□□□□□ -0.78
CLK3-226ENST00000569406 ATP6AP1LQ52LC2 224 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 TECRLQ5HYJ1 363 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 MTFR2Q6P444 385 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 SLC24A5Q71RS6 500 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 NEK7Q8TDX7 302 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 C16orf78Q8WTQ4 265 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 CPPED1Q9BRF8 314 aaPredicted RBP10.17□□□□□ -0.78
CLK3-226ENST00000569406 TLNRD1Q9H1K6 362 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 FBXO44Q9H4M3 255 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 ACTL8Q9H568 366 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 PPP1R3EQ9H7J1 279 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 PLEKHB1Q9UF11 243 aaPredicted RBP10.17□□□□□ -0.78
CLK3-226ENST00000569406 ACSL6Q9UKU0 697 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 STARD10Q9Y365 291 aa10.17□□□□□ -0.78
CLK3-226ENST00000569406 RANBP2P49792 3224 aaKnown RBP10.16□□□□□ -0.78
CLK3-226ENST00000569406 EFCAB14O75071 495 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 ZNF682O95780 498 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 EOMESO95936 686 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 IFNGP01579 166 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 TCRBP04435 133 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 RNH1P13489 461 aaKnown RBP10.16□□□□□ -0.78
CLK3-226ENST00000569406 PPP3CBP16298 524 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 EPB42P16452 691 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 OR1E1P30953 314 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 ATP4BP51164 291 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 SLBPQ14493 270 aaKnown RBP eCLIP10.16□□□□□ -0.78
CLK3-226ENST00000569406 PLA1AQ53H76 456 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 CARD16Q5EG05 197 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 ADAM5Q6NVV9 412 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 TMEM91Q6ZNR0 172 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 LINGO2Q7L985 606 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 TPRA1Q86W33 373 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 CILP2Q8IUL8 1156 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 RNF113BQ8IZP6 322 aaKnown RBP10.16□□□□□ -0.78
CLK3-226ENST00000569406 HDDC3Q8N4P3 179 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 FUBP3Q96I24 572 aaKnown RBP eCLIP10.16□□□□□ -0.78
CLK3-226ENST00000569406 DUSP15Q9H1R2 295 aaPredicted RBP10.16□□□□□ -0.78
CLK3-226ENST00000569406 MRPS30Q9NP92 439 aaKnown RBP10.16□□□□□ -0.78
CLK3-226ENST00000569406 TREM1Q9NP99 234 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 MGAT4CQ9UBM8 478 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 ZNF629Q9UEG4 869 aaPredicted RBP10.16□□□□□ -0.78
CLK3-226ENST00000569406 MOKQ9UQ07 419 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 CBY3A6NI87 242 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 COLCA2A8K830 154 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 NUDT19A8MXV4 375 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 G3V3Q6 166 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 PIP5K1BO14986 540 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 FZD7O75084 574 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 ACVRL1P37023 503 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 ZP1P60852 638 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 UFM1P61960 85 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 EMX2Q04743 252 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 TOMM34Q15785 309 aaPredicted RBP10.16□□□□□ -0.78
CLK3-226ENST00000569406 ZNF239Q16600 458 aaKnown RBP10.16□□□□□ -0.78
CLK3-226ENST00000569406 ARHGAP15Q53QZ3 475 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 SIRPB2Q5JXA9 342 aa10.16□□□□□ -0.78
CLK3-226ENST00000569406 IFI44Q8TCB0 444 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms