RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 TRPC5Q9UL62 973 aaPredicted RBP3.04□□□□□ -1.92
VPS35-208ENST00000568612 TBC1D24Q9ULP9 559 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 STAP1Q9ULZ2 295 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 TBX20Q9UMR3 447 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 STUB1Q9UNE7 303 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 TRAPPC4Q9Y296 219 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 MAB21L2Q9Y586 359 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 U3KQV3 271 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 DIP2BQ9P265 1576 aa3.04□□□□□ -1.92
VPS35-208ENST00000568612 C10orf71Q711Q0 1435 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 PCSK5Q92824 1860 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 NFASCO94856 1347 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 FAM205AQ6ZU69 1335 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 A0A0A6YYH2 397 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 A0A0J9YYE9 177 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 A0A0U1RQK1 487 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 RNF103-CHMP3A0A140T963 221 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 HSFX4A0A1B0GTS1 333 aaPredicted RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 PNMA8CA0A1B0GUJ8 204 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 HSFX3A0A1B0GWH4 333 aaPredicted RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 ZNF320A2RRD8 509 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 TBC1D3FA6NER0 549 aaPredicted RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 PGPEP1LA6NFU8 196 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 WIPF3A6NGB9 483 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 DNAJC9-AS1A6NH13 148 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 A6NJ64 397 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 AQP12BA6NM10 295 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 ZNF716A6NP11 495 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 TRIM49D1C9J1S8 452 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 BLOC1S5-TXNDC5H3BN57 136 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 M0R3G1 203 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 SIGLEC5O15389 551 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 MED7O43513 233 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 TYROBPO43914 113 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 SSX4O60224 188 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 OR10H2O60403 315 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 OR10H3O60404 316 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 HPGDSO60760 199 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 MRPS14O60783 128 aaKnown RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 PRAMEF2O60811 474 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 SCN2BO60939 215 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 DNAJB6O75190 326 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 RHBDL1O75783 438 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 ATG12O94817 140 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 CTDNEP1O95476 244 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 ACSL3O95573 720 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 TRBC1P01850 177 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 CELA2AP08217 269 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 MELTFP08582 738 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 HTR1AP08908 422 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 SPARCP09486 303 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 METTL15P1P0C7V9 234 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 ZNF735P0CB33 412 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 HIST1H1BP16401 226 aaKnown RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 ZNF25P17030 456 aaPredicted RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 LBPP18428 481 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 MAGP20916 626 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 PTNP21246 168 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 UBA1P22314 1058 aaKnown RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 NR2F2P24468 414 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 ADRA1DP25100 572 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 GKP32189 559 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 CHRNA3P32297 505 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 GGT5P36269 586 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 HTR5AP47898 357 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 CAMLGP49069 296 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 FMO5P49326 533 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 PLA2G16P53816 162 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 RAP1BP61224 184 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 ARF6P62330 175 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 SORDQ00796 357 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 PMP22Q01453 160 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 YWHAHQ04917 246 aaPredicted RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 EPS8Q12929 822 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 FOXF2Q12947 444 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 GPS1Q13098 491 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 RPA4Q13156 261 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 BIKQ13323 160 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 ORC2Q13416 577 aaPredicted RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 FASTKQ14296 549 aaKnown RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 HEPACAMQ14CZ8 416 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 TMED2Q15363 201 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 RBMS2Q15434 407 aaKnown RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 CHI3L2Q15782 390 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 ATP6AP1Q15904 470 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 HLFQ16534 295 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 NRF1Q16656 503 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 GUCA2BQ16661 112 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 GOLGA7BQ2TAP0 167 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 VPS26BQ4G0F5 336 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 C14orf28Q4W4Y0 310 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 Q5PR19 223 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 DCAF10Q5QP82 559 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 FAM74A1Q5RGS3 127 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 SPATA46Q5T0L3 261 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 RNLSQ5VYX0 342 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 FCRL6Q6DN72 434 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 DHRS7BQ6IAN0 325 aaPredicted RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 SULT6B1Q6IMI4 303 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 ANKRD54Q6NXT1 300 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms