RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 NKX2-2O95096 273 aa15.09■□□□□ 0.01
CLN3-211ENST00000564091 GSTA1P08263 222 aa15.09■□□□□ 0.01
CLN3-211ENST00000564091 MYL2P10916 166 aa15.09■□□□□ 0.01
CLN3-211ENST00000564091 GPC1P35052 558 aa15.09■□□□□ 0.01
CLN3-211ENST00000564091 SLC29A2Q14542 456 aa15.09■□□□□ 0.01
CLN3-211ENST00000564091 KIAA0040Q15053 153 aa15.09■□□□□ 0.01
CLN3-211ENST00000564091 CTU2Q2VPK5 515 aaKnown RBP15.09■□□□□ 0.01
CLN3-211ENST00000564091 GLE1Q53GS7 698 aaKnown RBP15.09■□□□□ 0.01
CLN3-211ENST00000564091 ALKBH2Q6NS38 261 aa15.09■□□□□ 0.01
CLN3-211ENST00000564091 FIGNL1Q6PIW4 674 aa15.09■□□□□ 0.01
CLN3-211ENST00000564091 TRMT10CQ7L0Y3 403 aaKnown RBP15.09■□□□□ 0.01
CLN3-211ENST00000564091 ZAR1Q86SH2 424 aa15.09■□□□□ 0.01
CLN3-211ENST00000564091 WFDC8Q8IUA0 241 aa15.09■□□□□ 0.01
CLN3-211ENST00000564091 GTPBP8Q8N3Z3 284 aaPredicted RBP15.09■□□□□ 0.01
CLN3-211ENST00000564091 CEP112Q8N8E3 955 aa15.09■□□□□ 0.01
CLN3-211ENST00000564091 MNS1Q8NEH6 495 aa15.09■□□□□ 0.01
CLN3-211ENST00000564091 IGFBPL1Q8WX77 278 aa15.09■□□□□ 0.01
CLN3-211ENST00000564091 GMPPAQ96IJ6 420 aaPredicted RBP15.09■□□□□ 0.01
CLN3-211ENST00000564091 PSMC3IPQ9P2W1 217 aaPredicted RBP15.09■□□□□ 0.01
CLN3-211ENST00000564091 STOML1Q9UBI4 398 aa15.09■□□□□ 0.01
CLN3-211ENST00000564091 DCDC2Q9UHG0 476 aa15.09■□□□□ 0.01
CLN3-211ENST00000564091 MCTS1Q9ULC4 181 aaKnown RBP15.09■□□□□ 0.01
CLN3-211ENST00000564091 CCL27Q9Y4X3 112 aa15.09■□□□□ 0.01
CLN3-211ENST00000564091 USF3Q68DE3 2245 aa15.09■□□□□ 0.01
CLN3-211ENST00000564091 A0A087WZY1 265 aa15.08■□□□□ 0
CLN3-211ENST00000564091 A0A1W2PRB8 838 aa15.08■□□□□ 0
CLN3-211ENST00000564091 TTC36A6NLP5 189 aa15.08■□□□□ 0
CLN3-211ENST00000564091 TNFSF11O14788 317 aa15.08■□□□□ 0
CLN3-211ENST00000564091 ADAMDEC1O15204 470 aa15.08■□□□□ 0
CLN3-211ENST00000564091 PDPK1O15530 556 aa15.08■□□□□ 0
CLN3-211ENST00000564091 AKAP10O43572 662 aa15.08■□□□□ 0
CLN3-211ENST00000564091 OXSR1O95747 527 aaPredicted RBP15.08■□□□□ 0
CLN3-211ENST00000564091 PPP3CBP16298 524 aa15.08■□□□□ 0
CLN3-211ENST00000564091 ZNF17P17021 662 aa15.08■□□□□ 0
CLN3-211ENST00000564091 IL11P20809 199 aa15.08■□□□□ 0
CLN3-211ENST00000564091 PSMA4P25789 261 aaKnown RBP15.08■□□□□ 0
CLN3-211ENST00000564091 MAP3K8P41279 467 aa15.08■□□□□ 0
CLN3-211ENST00000564091 SLC18A2Q05940 514 aa15.08■□□□□ 0
CLN3-211ENST00000564091 VPS26BQ4G0F5 336 aa15.08■□□□□ 0
CLN3-211ENST00000564091 ZNF385BQ569K4 471 aa15.08■□□□□ 0
CLN3-211ENST00000564091 CLEC6AQ6EIG7 209 aa15.08■□□□□ 0
CLN3-211ENST00000564091 MFSD12Q6NUT3 480 aa15.08■□□□□ 0
CLN3-211ENST00000564091 FRMD7Q6ZUT3 714 aa15.08■□□□□ 0
CLN3-211ENST00000564091 SZRD1Q7Z422 152 aa15.08■□□□□ 0
CLN3-211ENST00000564091 NUP43Q8NFH3 380 aa15.08■□□□□ 0
CLN3-211ENST00000564091 OR2V1Q8NHB1 315 aa15.08■□□□□ 0
CLN3-211ENST00000564091 TMEM171Q8WVE6 324 aa15.08■□□□□ 0
CLN3-211ENST00000564091 HOXB13Q92826 284 aaPredicted RBP15.08■□□□□ 0
CLN3-211ENST00000564091 CCDC126Q96EE4 140 aa15.08■□□□□ 0
CLN3-211ENST00000564091 OTUB1Q96FW1 271 aaPredicted RBP15.08■□□□□ 0
CLN3-211ENST00000564091 PLPPR2Q96GM1 343 aa15.08■□□□□ 0
CLN3-211ENST00000564091 SH3YL1Q96HL8 342 aaPredicted RBP15.08■□□□□ 0
CLN3-211ENST00000564091 RNF145Q96MT1 663 aa15.08■□□□□ 0
CLN3-211ENST00000564091 ACTR6Q9GZN1 396 aa15.08■□□□□ 0
CLN3-211ENST00000564091 MED17Q9NVC6 651 aa15.08■□□□□ 0
CLN3-211ENST00000564091 FBXO34Q9NWN3 711 aa15.08■□□□□ 0
CLN3-211ENST00000564091 GIMAP1-GIMAP5A0A087WTJ2 511 aa15.07■□□□□ 0
CLN3-211ENST00000564091 A0A0J9YW62 118 aa15.07■□□□□ 0
CLN3-211ENST00000564091 SYNGR4O95473 234 aa15.07■□□□□ 0
CLN3-211ENST00000564091 PROCP04070 461 aa15.07■□□□□ 0
CLN3-211ENST00000564091 ACP2P11117 423 aa15.07■□□□□ 0
CLN3-211ENST00000564091 NID1P14543 1247 aa15.07■□□□□ 0
CLN3-211ENST00000564091 NR1H2P55055 460 aa15.07■□□□□ 0
CLN3-211ENST00000564091 RAC1P63000 192 aa15.07■□□□□ 0
CLN3-211ENST00000564091 PPP2R2BQ00005 443 aa15.07■□□□□ 0
CLN3-211ENST00000564091 PLPPR5Q32ZL2 321 aa15.07■□□□□ 0
CLN3-211ENST00000564091 CFAP157Q5JU67 520 aa15.07■□□□□ 0
CLN3-211ENST00000564091 CPTPQ5TA50 214 aa15.07■□□□□ 0
CLN3-211ENST00000564091 CDRT4Q8N9R6 151 aa15.07■□□□□ 0
CLN3-211ENST00000564091 SLC16A11Q8NCK7 471 aa15.07■□□□□ 0
CLN3-211ENST00000564091 CEP70Q8NHQ1 597 aa15.07■□□□□ 0
CLN3-211ENST00000564091 POC1BQ8TC44 478 aa15.07■□□□□ 0
CLN3-211ENST00000564091 GIMAP5Q96F15 307 aa15.07■□□□□ 0
CLN3-211ENST00000564091 C16orf58Q96GQ5 468 aa15.07■□□□□ 0
CLN3-211ENST00000564091 C12orf65Q9H3J6 166 aaKnown RBP15.07■□□□□ 0
CLN3-211ENST00000564091 C12orf49Q9H741 205 aa15.07■□□□□ 0
CLN3-211ENST00000564091 LRTM1Q9HBL6 345 aa15.07■□□□□ 0
CLN3-211ENST00000564091 ZNF701Q9NV72 531 aaPredicted RBP15.07■□□□□ 0
CLN3-211ENST00000564091 PAQR5Q9NXK6 330 aaPredicted RBP15.07■□□□□ 0
CLN3-211ENST00000564091 ATRQ13535 2644 aa15.07■□□□□ 0
CLN3-211ENST00000564091 GLRA3O75311 464 aa15.06■□□□□ 0
CLN3-211ENST00000564091 KCNK2O95069 426 aa15.06■□□□□ 0
CLN3-211ENST00000564091 NTN1O95631 604 aa15.06■□□□□ 0
CLN3-211ENST00000564091 NGFRP08138 427 aa15.06■□□□□ 0
CLN3-211ENST00000564091 IFI6P09912 130 aa15.06■□□□□ 0
CLN3-211ENST00000564091 FAM153BP0C7A2 387 aa15.06■□□□□ 0
CLN3-211ENST00000564091 UROSP10746 265 aa15.06■□□□□ 0
CLN3-211ENST00000564091 PAX1P15863 534 aa15.06■□□□□ 0
CLN3-211ENST00000564091 EFNA1P20827 205 aaPredicted RBP15.06■□□□□ 0
CLN3-211ENST00000564091 MANFP55145 182 aaKnown RBP15.06■□□□□ 0
CLN3-211ENST00000564091 ATP5J2P56134 94 aa15.06■□□□□ 0
CLN3-211ENST00000564091 DUSP5Q16690 384 aa15.06■□□□□ 0
CLN3-211ENST00000564091 FAM153CQ494X1 144 aa15.06■□□□□ 0
CLN3-211ENST00000564091 CCNJQ5T5M9 372 aa15.06■□□□□ 0
CLN3-211ENST00000564091 HBMQ6B0K9 141 aa15.06■□□□□ 0
CLN3-211ENST00000564091 BEND4Q6ZU67 534 aa15.06■□□□□ 0
CLN3-211ENST00000564091 ESPNLQ6ZVH7 1005 aa15.06■□□□□ 0
CLN3-211ENST00000564091 LRRN4CLQ8ND94 238 aa15.06■□□□□ 0
CLN3-211ENST00000564091 OR2T11Q8NH01 316 aa15.06■□□□□ 0
CLN3-211ENST00000564091 CLHC1Q8NHS4 586 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms