RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 UGT1A8Q9HAW9 530 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 MYNNQ9NPC7 610 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 IL1RAPQ9NPH3 570 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 NIT2Q9NQR4 276 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 G6PC2Q9NQR9 355 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 LYARQ9NX58 379 aaKnown RBP4.72□□□□□ -1.65
VPS35-205ENST00000563984 ADA2Q9NZK5 511 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 STOX2Q9P2F5 926 aaPredicted RBP4.72□□□□□ -1.65
VPS35-205ENST00000563984 ONECUT1Q9UBC0 465 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 SEC14L3Q9UDX4 400 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 MIOXQ9UGB7 285 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 NDRG3Q9UGV2 375 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 ERRFI1Q9UJM3 462 aaPredicted RBP4.72□□□□□ -1.65
VPS35-205ENST00000563984 ELF5Q9UKW6 265 aaPredicted RBP4.72□□□□□ -1.65
VPS35-205ENST00000563984 PADI1Q9ULC6 663 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 FLVCR2Q9UPI3 526 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 PSG11Q9UQ72 335 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 MRPS33Q9Y291 106 aaKnown RBP4.72□□□□□ -1.65
VPS35-205ENST00000563984 CARMIL3Q8ND23 1372 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 TONSLQ96HA7 1378 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 VPS8Q8N3P4 1428 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 SETD5Q9C0A6 1442 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 MED23Q9ULK4 1368 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 C17orf102A2RUQ5 167 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 OR2A25A4D2G3 310 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 METTL21EPA6NDL7 271 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 CDRT15L2A8MXV6 281 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 SMLR1H3BR10 107 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 PSMD12O00232 456 aaPredicted RBP4.71□□□□□ -1.66
VPS35-205ENST00000563984 EEF2KO00418 725 aaKnown RBP4.71□□□□□ -1.66
VPS35-205ENST00000563984 SOCS2O14508 198 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 ZBTB5O15062 677 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 OGG1O15527 345 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 DLEU1O43261 78 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 TNFSF14O43557 240 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 DUX1O43812 170 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 SDC3O75056 442 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 POP7O75817 140 aaKnown RBP4.71□□□□□ -1.66
VPS35-205ENST00000563984 ZMPSTE24O75844 475 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 OR2C1O95371 312 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 MOCS2O96007 188 aaPredicted RBP4.71□□□□□ -1.66
VPS35-205ENST00000563984 OAS1P00973 400 aaKnown RBP4.71□□□□□ -1.66
VPS35-205ENST00000563984 IFNA21P01568 189 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 MBPP02686 304 aaPredicted RBP4.71□□□□□ -1.66
VPS35-205ENST00000563984 MBL2P11226 248 aaPredicted RBP4.71□□□□□ -1.66
VPS35-205ENST00000563984 SCGB1A1P11684 91 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 IFI30P13284 250 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 SPI1P17947 270 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 UBA1P22314 1058 aaKnown RBP4.71□□□□□ -1.66
VPS35-205ENST00000563984 ELK4P28324 431 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 SSTR2P30874 369 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 HOXC9P31274 260 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 CEACAM6P40199 344 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 GPR143P51810 404 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 MFAP4P55083 255 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 MLF1P58340 268 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 CD81P60033 236 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 RAP1BP61224 184 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 SORDQ00796 357 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 CKAP4Q07065 602 aaKnown RBP4.71□□□□□ -1.66
VPS35-205ENST00000563984 GRB7Q14451 532 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 KRT81Q14533 505 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 GRK1Q15835 563 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 ALKBH6Q3KRA9 238 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 HSD17B12Q53GQ0 312 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 OR2B11Q5JQS5 317 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 SLC35D3Q5M8T2 416 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 PRAMEF8Q5VWM4 474 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 TRIQKQ629K1 86 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 EMBQ6PCB8 327 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 TMEM88Q6PEY1 159 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 ULK3Q6PHR2 472 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 DOK6Q6PKX4 331 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 SHC4Q6S5L8 630 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 BTNL3Q6UXE8 466 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 HSDL2Q6YN16 418 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 SYT13Q7L8C5 426 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 ARCQ7LC44 396 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 TIPARPQ7Z3E1 657 aaKnown RBP4.71□□□□□ -1.66
VPS35-205ENST00000563984 LDB1Q86U70 411 aaPredicted RBP4.71□□□□□ -1.66
VPS35-205ENST00000563984 TSPAN33Q86UF1 283 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 ANGPTL5Q86XS5 388 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 GPALPP1Q8IXQ4 340 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 APCDD1Q8J025 514 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 PUSL1Q8N0Z8 303 aaKnown RBP4.71□□□□□ -1.66
VPS35-205ENST00000563984 PQLC3Q8N755 202 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 TMEM185AQ8NFB2 350 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 OR1M1Q8NGA1 313 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 KCNG3Q8TAE7 436 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 ZCCHC10Q8TBK6 192 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 AENQ8WTP8 325 aaKnown RBP4.71□□□□□ -1.66
VPS35-205ENST00000563984 TRUB1Q8WWH5 349 aaKnown RBP4.71□□□□□ -1.66
VPS35-205ENST00000563984 SLC38A4Q969I6 547 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 TBRG4Q969Z0 631 aaKnown RBP eCLIP4.71□□□□□ -1.66
VPS35-205ENST00000563984 PRR11Q96HE9 360 aaPredicted RBP4.71□□□□□ -1.66
VPS35-205ENST00000563984 SENP5Q96HI0 755 aaPredicted RBP4.71□□□□□ -1.66
VPS35-205ENST00000563984 C4orf36Q96KX1 117 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 SENP8Q96LD8 212 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 DUX5Q96PT3 197 aa4.71□□□□□ -1.66
VPS35-205ENST00000563984 MCCC1Q96RQ3 725 aaPredicted RBP4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms