RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 OR1D5P58170 312 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 PRPS1P60891 318 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 DCDP81605 110 aaKnown RBP6.97□□□□□ -1.29
VPS39-204ENST00000561818 CDK5Q00535 292 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 PSG6Q00889 435 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 RHAGQ02094 409 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 CSTF1Q05048 431 aaKnown RBP6.97□□□□□ -1.29
VPS39-204ENST00000561818 MGAT2Q10469 447 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 LSAMPQ13449 338 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 PIN1Q13526 163 aaPredicted RBP6.97□□□□□ -1.29
VPS39-204ENST00000561818 ZNF267Q14586 743 aaPredicted RBP6.97□□□□□ -1.29
VPS39-204ENST00000561818 NEDD8Q15843 81 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 ISXQ2M1V0 245 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 DEFB110Q30KQ9 67 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 HLA-BQ31612 363 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 AMZ1Q400G9 498 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 MFSD4BQ5TF39 518 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 PLAG1Q6DJT9 500 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 GTF2IRD2BQ6EKJ0 949 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 FAM180BQ6P0A1 224 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 ARHGAP11AQ6P4F7 1023 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 ZNF836Q6ZNA1 936 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 TTLL10Q6ZVT0 673 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 TMPRSS11FQ6ZWK6 438 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 KANSL1Q7Z3B3 1105 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 ARHGAP22Q7Z5H3 698 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 TSEN54Q7Z6J9 526 aaKnown RBP6.97□□□□□ -1.29
VPS39-204ENST00000561818 GTF2IRD2Q86UP8 949 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 P2RY8Q86VZ1 359 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 ZNF761Q86XN6 746 aaPredicted RBP6.97□□□□□ -1.29
VPS39-204ENST00000561818 TMEM151BQ8IW70 566 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 SLC25A45Q8N413 288 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 FRMD1Q8N878 549 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 DTWD2Q8NBA8 298 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 AGBL5Q8NDL9 886 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 KBTBD8Q8NFY9 601 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 OR9Q2Q8NGE9 314 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 OR5T3Q8NGG3 340 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 OR10Q1Q8NGQ4 319 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 NUBPLQ8TB37 319 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 SLC2A12Q8TD20 617 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 TMEM239Q8WW34 195 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 ZNF501Q96CX3 271 aaPredicted RBP6.97□□□□□ -1.29
VPS39-204ENST00000561818 LCORQ96JN0 433 aaPredicted RBP6.97□□□□□ -1.29
VPS39-204ENST00000561818 GFM1Q96RP9 751 aaKnown RBP6.97□□□□□ -1.29
VPS39-204ENST00000561818 NRTNQ99748 197 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 NIPSNAP1Q9BPW8 284 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 YIPF4Q9BSR8 244 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 CNPPD1Q9BV87 410 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 LRRN3Q9H3W5 708 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 CAPN10Q9HC96 672 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 MAN2C1Q9NTJ4 1040 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 TBC1D23Q9NUY8 699 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 MRPS18AQ9NVS2 196 aaKnown RBP6.97□□□□□ -1.29
VPS39-204ENST00000561818 FKBP14Q9NWM8 211 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 UCKL1Q9NWZ5 548 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 H2AFY2Q9P0M6 372 aaPredicted RBP6.97□□□□□ -1.29
VPS39-204ENST00000561818 PPIEQ9UNP9 301 aaKnown RBP6.97□□□□□ -1.29
VPS39-204ENST00000561818 RNF6Q9Y252 685 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 GPR55Q9Y2T6 319 aaPredicted RBP6.97□□□□□ -1.29
VPS39-204ENST00000561818 SLC6A5Q9Y345 797 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 MRPS2Q9Y399 296 aaKnown RBP6.97□□□□□ -1.29
VPS39-204ENST00000561818 EXOSC1Q9Y3B2 195 aaKnown RBP6.97□□□□□ -1.29
VPS39-204ENST00000561818 A3GALT2U3KPV4 340 aa6.97□□□□□ -1.29
VPS39-204ENST00000561818 CEP192Q8TEP8 1941 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 A0A087WUU8 490 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 PRAMEF27A3QJZ7 478 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 PRAMEF25A6NGN4 478 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 SERINC4A6NH21 518 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 SLC22A31A6NKX4 558 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 C9J4A7 227 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 NPIPB9F8W1W9 429 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 MYL12BO14950 172 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 MITFO75030 526 aaPredicted RBP6.96□□□□□ -1.3
VPS39-204ENST00000561818 RAB36O95755 333 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 RECKO95980 971 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 BCL10O95999 233 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 CSTAP01040 98 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 FGF5P12034 268 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 GABRB1P18505 474 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 TNFRSF1BP20333 461 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 S1PR1P21453 382 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 TBXA2RP21731 343 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 GALP22466 123 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 MMP11P24347 488 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 PSMA1P25786 263 aaKnown RBP6.96□□□□□ -1.3
VPS39-204ENST00000561818 SLC6A6P31641 620 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 YAP1P46937 504 aaKnown RBP6.96□□□□□ -1.3
VPS39-204ENST00000561818 OMPP47874 163 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 PGDP52209 483 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 PNLIPRP2P54317 469 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 SLC37A1P57057 533 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 PPP1CAP62136 330 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 ACTC1P68032 377 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 ACTA1P68133 377 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 E2F1Q01094 437 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 PRKCDQ05655 676 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 DUSP2Q05923 314 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 LGALS3BPQ08380 585 aa6.96□□□□□ -1.3
VPS39-204ENST00000561818 MFSD13AQ14CX5 517 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms