RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 VPS36Q86VN1 386 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 LCA5Q86VQ0 697 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 TMEM17Q86X19 198 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 ZNF679Q8IYX0 411 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 ANKFN1Q8N957 763 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 STEAP2Q8NFT2 490 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 OR51G2Q8NGK0 314 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 ADAMTS16Q8TE57 1224 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 SPRYD4Q8WW59 207 aaPredicted RBP1.29□□□□□ -2.2
USP3-209ENST00000558925 ARNTL2Q8WYA1 636 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 PELI1Q96FA3 418 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 C12orf66Q96MD2 445 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 AMDHD1Q96NU7 426 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 CCT8L2Q96SF2 557 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 RIT2Q99578 217 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 NPAS2Q99743 824 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 C19orf43Q9BQ61 176 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 NFKBIZQ9BYH8 718 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 COMMD4Q9H0A8 199 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 COG4Q9H9E3 785 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 MRPL39Q9NYK5 338 aaKnown RBP1.29□□□□□ -2.2
USP3-209ENST00000558925 SIGLEC8Q9NYZ4 499 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 GNG12Q9UBI6 72 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 RNF14Q9UBS8 474 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 MEMO1Q9Y316 297 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 DHRS7Q9Y394 339 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 MRPL11Q9Y3B7 192 aaKnown RBP1.29□□□□□ -2.2
USP3-209ENST00000558925 OR10H1Q9Y4A9 318 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 MMP24Q9Y5R2 645 aa1.29□□□□□ -2.2
USP3-209ENST00000558925 CHD4Q14839 1912 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 CFAP65Q6ZU64 1925 aaKnown RBP1.28□□□□□ -2.2
USP3-209ENST00000558925 C15orf38-AP3S2A0A0A6YYH1 394 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 TRBV7-9A0A0J9YWB2 115 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 BCLAF3A2AJT9 711 aaKnown RBP1.28□□□□□ -2.2
USP3-209ENST00000558925 MBLAC1A4D2B0 266 aaPredicted RBP1.28□□□□□ -2.2
USP3-209ENST00000558925 ACOD1A6NK06 481 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 VSTM2BA6NLU5 285 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 E9PQ18 207 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 H3BMQ9 156 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 FOXE1O00358 373 aaPredicted RBP1.28□□□□□ -2.2
USP3-209ENST00000558925 ARPC3O15145 178 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 ZNF208O43345 1280 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 LATO43561 262 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 GALR3O60755 368 aaPredicted RBP1.28□□□□□ -2.2
USP3-209ENST00000558925 SNNO75324 88 aaPredicted RBP1.28□□□□□ -2.2
USP3-209ENST00000558925 SURF6O75683 361 aaKnown RBP1.28□□□□□ -2.2
USP3-209ENST00000558925 SLC2A10O95528 541 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 NUDT14O95848 222 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 SLC35E2P0CK97 266 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 LAMP1P11279 417 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 FOLR2P14207 255 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 BCL3P20749 454 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 IGFBP5P24593 272 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 OTX2P32243 289 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 ALDH3B2P48448 385 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 TAF6P49848 677 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 HLCSP50747 726 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 PPT1P50897 306 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 AIF1P55008 147 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 NTHL1P78549 312 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 MS4A2Q01362 244 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 TNFRSF17Q02223 184 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 ZFP36L1Q07352 338 aaKnown RBP1.28□□□□□ -2.2
USP3-209ENST00000558925 PUDPQ08623 228 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 ZNF154Q13106 437 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 RUNX3Q13761 415 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 LAGE3Q14657 143 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 FCN2Q15485 313 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 SYPL1Q16563 259 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 TP53I3Q53FA7 332 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 BOLA3Q53S33 107 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 CYBRD1Q53TN4 286 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 LGSNQ5TDP6 509 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 PVRIGQ6DKI7 326 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 ZSCAN25Q6NSZ9 544 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 UFSP1Q6NVU6 142 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 SCYL2Q6P3W7 929 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 FAM199XQ6PEV8 388 aaPredicted RBP1.28□□□□□ -2.2
USP3-209ENST00000558925 UQCC3Q6UW78 93 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 SYT10Q6XYQ8 523 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 STAC2Q6ZMT1 411 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 ACOT1Q86TX2 421 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 VSTM4Q8IW00 320 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 PHC2Q8IXK0 858 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 ZNF440Q8IYI8 595 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 GPR65Q8IYL9 337 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 UBQLNLQ8IYU4 475 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 MCOLN2Q8IZK6 566 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 CLEC4FQ8N1N0 589 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 ZCCHC7Q8N3Z6 543 aaKnown RBP1.28□□□□□ -2.2
USP3-209ENST00000558925 BPIFB2Q8N4F0 458 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 EIF1ADQ8N9N8 165 aaKnown RBP1.28□□□□□ -2.2
USP3-209ENST00000558925 ZSCAN4Q8NAM6 433 aaPredicted RBP1.28□□□□□ -2.2
USP3-209ENST00000558925 C17orf47Q8NEP4 570 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 STXBP6Q8NFX7 210 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 OR9A4Q8NGU2 314 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 OR1F12Q8NHA8 337 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 N4BP2L2Q92802 583 aaPredicted RBP1.28□□□□□ -2.2
USP3-209ENST00000558925 SDSLQ96GA7 329 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 SH3YL1Q96HL8 342 aaPredicted RBP1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms