RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 OTPQ5XKR4 325 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 ZC3H14Q6PJT7 736 aaKnown RBP11.52□□□□□ -0.57
LDLR-205ENST00000557933 TEX261Q6UWH6 196 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 COMMD7Q86VX2 200 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 RASGRP3Q8IV61 690 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 KRT78Q8N1N4 520 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 KLHL36Q8N4N3 616 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 UXS1Q8NBZ7 420 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 DUSP18Q8NEJ0 188 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 TRMT10AQ8TBZ6 339 aaKnown RBP11.52□□□□□ -0.57
LDLR-205ENST00000557933 IRF7Q92985 503 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 NXPE3Q969Y0 559 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 ALG8Q9BVK2 526 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 MS4A8Q9BY19 250 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 FKRPQ9H9S5 495 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 SLC7A7Q9UM01 511 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 KCNK6Q9Y257 313 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 U3KQ87 197 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 VPS13AQ96RL7 3174 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 DENND4CQ5VZ89 1909 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 TRAV27A0A087WT01 109 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 TMEM129A0AVI4 362 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 PDGFAP04085 211 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 ZNF30P17039 623 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 PAICSP22234 425 aaKnown RBP11.52□□□□□ -0.57
LDLR-205ENST00000557933 PDX1P52945 283 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 PCBP4P57723 403 aaKnown RBP11.52□□□□□ -0.57
LDLR-205ENST00000557933 HTRA4P83105 476 aaPredicted RBP11.52□□□□□ -0.57
LDLR-205ENST00000557933 EXOSC2Q13868 293 aaKnown RBP11.52□□□□□ -0.57
LDLR-205ENST00000557933 ZNF805Q5CZA5 627 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 BHLHB9Q6PI77 547 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 ZNF322Q6U7Q0 402 aaPredicted RBP11.52□□□□□ -0.57
LDLR-205ENST00000557933 LINC01555Q8NAE3 123 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 SLC16A11Q8NCK7 471 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 RAD51AP1Q96B01 352 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 SPRTNQ9H040 489 aaPredicted RBP11.52□□□□□ -0.57
LDLR-205ENST00000557933 USP36Q9P275 1121 aaKnown RBP11.52□□□□□ -0.57
LDLR-205ENST00000557933 NDOR1Q9UHB4 597 aa11.52□□□□□ -0.57
LDLR-205ENST00000557933 TRPM6Q9BX84 2022 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 TRDV1A0A1B0GX56 115 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 ZNF860A6NHJ4 632 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 IMPA2O14732 288 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 SPINT1O43278 529 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 LILRB5O75023 590 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 POU3F2P20265 443 aaPredicted RBP11.51□□□□□ -0.57
LDLR-205ENST00000557933 SLC6A1P30531 599 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 PYCR1P32322 319 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 SELENOPP49908 381 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 UBE2MP61081 183 aaKnown RBP11.51□□□□□ -0.57
LDLR-205ENST00000557933 TRILQ7L0X0 811 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 NUDT13Q86X67 352 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 OR2T35Q8NGX2 323 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 PHOSPHO2Q8TCD6 241 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 GIMAP1Q8WWP7 306 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 FGF11Q92914 225 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 PRRC1Q96M27 445 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 KCNJ15Q99712 375 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 ZCCHC2Q9C0B9 1178 aaKnown RBP11.51□□□□□ -0.57
LDLR-205ENST00000557933 NEUROD4Q9HD90 331 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 LIPT1Q9Y234 373 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 AK6Q9Y3D8 172 aaKnown RBP11.51□□□□□ -0.57
LDLR-205ENST00000557933 CELSR3Q9NYQ7 3312 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 NOTCH4Q99466 2003 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 PCP4L1A6NKN8 68 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 CDK2AP1O14519 115 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 RNF13O43567 381 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 DNAJB6O75190 326 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 SLC43A1O75387 559 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 RFPL3O75679 317 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 ACRP10323 421 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 RAB33AQ14088 237 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 SUZ12Q15022 739 aaKnown RBP11.51□□□□□ -0.57
LDLR-205ENST00000557933 ST3GAL2Q16842 350 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 TMEM255AQ5JRV8 349 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 TPGS2Q68CL5 300 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 PSRC1Q6PGN9 363 aaPredicted RBP11.51□□□□□ -0.57
LDLR-205ENST00000557933 CREB3L2Q70SY1 520 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 SSX6Q7RTT6 188 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 SPRED2Q7Z698 418 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 KIAA0907Q7Z7F0 614 aaPredicted RBP11.51□□□□□ -0.57
LDLR-205ENST00000557933 ZNF485Q8NCK3 441 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 SP7Q8TDD2 431 aaPredicted RBP11.51□□□□□ -0.57
LDLR-205ENST00000557933 GRHL3Q8TE85 626 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 NUS1Q96E22 293 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 MRGPRX3Q96LB0 322 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 ZNF558Q96NG5 402 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 MCHR1Q99705 422 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 DHRS9Q9BPW9 319 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 GTPBP2Q9BX10 602 aaKnown RBP11.51□□□□□ -0.57
LDLR-205ENST00000557933 CACNG6Q9BXT2 260 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 RHBGQ9H310 441 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 METTL17Q9H7H0 456 aaPredicted RBP11.51□□□□□ -0.57
LDLR-205ENST00000557933 NIPAL2Q9H841 368 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 SLC35C2Q9NQQ7 365 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 FBXO34Q9NWN3 711 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 CBLCQ9ULV8 474 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 PCDHGB7Q9Y5F8 929 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 CACNG2Q9Y698 323 aa11.51□□□□□ -0.57
LDLR-205ENST00000557933 A0A1W2PR48 441 aa11.5□□□□□ -0.57
LDLR-205ENST00000557933 DAPL1A0PJW8 107 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms