RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 B3GNT7Q8NFL0 401 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 OR52N2Q8NGI0 321 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.48□□□□□ -0.57
SHMT2-230ENST00000557427 GFM2Q969S9 779 aaKnown RBP11.48□□□□□ -0.57
SHMT2-230ENST00000557427 NCLNQ969V3 563 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 MTERF3Q96E29 417 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 REXO5Q96IC2 774 aaKnown RBP11.48□□□□□ -0.57
SHMT2-230ENST00000557427 CENPKQ9BS16 269 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 SPATA9Q9BWV2 254 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 OSBPL11Q9BXB4 747 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 UGT2B28Q9BY64 529 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 BHLHE41Q9C0J9 482 aaPredicted RBP11.48□□□□□ -0.57
SHMT2-230ENST00000557427 PIF1Q9H611 641 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 LIN28AQ9H9Z2 209 aaKnown RBP11.48□□□□□ -0.57
SHMT2-230ENST00000557427 LYRM4Q9HD34 91 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 NEUROD4Q9HD90 331 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 AHSPQ9NZD4 102 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 CLDN16Q9Y5I7 305 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 AP4B1Q9Y6B7 739 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 CLCA3PQ9Y6N3 262 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 SPACA6W5XKT8 324 aa11.48□□□□□ -0.57
SHMT2-230ENST00000557427 ZNF407Q9C0G0 2248 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 A0A0G2JNJ9 132 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 GNG14A0A1W2PPG7 69 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 WASHC1A8K0Z3 465 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 PLPP1O14494 284 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 UBTFL6P0CB48 400 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-230ENST00000557427 LAMP1P11279 417 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 GPX2P18283 190 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 PPP2R2BQ00005 443 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 CHRNB3Q05901 458 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 PDE7AQ13946 482 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 C18orf63Q68DL7 685 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 ERICH5Q6P6B1 374 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 UGT2A3Q6UWM9 527 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 C16orf47Q6ZP98 133 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-230ENST00000557427 ZBTB49Q6ZSB9 765 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 IKBIPQ70UQ0 350 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 COMMD6Q7Z4G1 85 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 ANKRD46Q86W74 232 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 CXorf67Q86X51 503 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-230ENST00000557427 GALNT4Q8N4A0 578 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 APCDD1LQ8NCL9 501 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 FAM110BQ8TC76 370 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 DOK4Q8TEW6 326 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 PANX1Q96RD7 426 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 CIB1Q99828 191 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 TTYH2Q9BSA4 534 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 REEP4Q9H6H4 257 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 MAGIXQ9H6Y5 334 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 PNPLA3Q9NST1 481 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 Q9UFV3 132 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 CORO2BQ9UQ03 480 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 WBP11Q9Y2W2 641 aaKnown RBP11.47□□□□□ -0.57
SHMT2-230ENST00000557427 FAM215AQ9Y5M1 114 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 MPDZO75970 2070 aa11.47□□□□□ -0.57
SHMT2-230ENST00000557427 GLOD5A6NK44 160 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 CLIC1O00299 241 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 RNASET2O00584 256 aaKnown RBP11.46□□□□□ -0.57
SHMT2-230ENST00000557427 TFECO14948 347 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-230ENST00000557427 SMAD7O15105 426 aaKnown RBP11.46□□□□□ -0.57
SHMT2-230ENST00000557427 PRKNO60260 465 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-230ENST00000557427 PRKRAO75569 313 aaKnown RBP11.46□□□□□ -0.57
SHMT2-230ENST00000557427 PRSS23O95084 383 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 GBAP04062 536 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 GSNP06396 782 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 GLI4P10075 376 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 TLX1P31314 330 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-230ENST00000557427 BSGP35613 385 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 ADH7P40394 386 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 GSTM5P46439 218 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 CYB561P49447 251 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 GPR143P51810 404 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 CHN2P52757 468 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 DCAF7P61962 342 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 TXNL4AP83876 142 aaKnown RBP11.46□□□□□ -0.57
SHMT2-230ENST00000557427 DAZAP2Q15038 168 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-230ENST00000557427 GXYLT1Q4G148 440 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 RTL6Q6ICC9 239 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 FAM71E1Q6IPT2 247 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 EPHX4Q8IUS5 362 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 SULF2Q8IWU5 870 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 VWA5B2Q8N398 1253 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 HORMAD2Q8N7B1 307 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 ZNF321PQ8N8H1 164 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 OR5M3Q8NGP4 307 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 OR10Q1Q8NGQ4 319 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 C16orf52Q8NHV5 167 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 CDC26Q8NHZ8 85 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 C16orf78Q8WTQ4 265 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 PTPMT1Q8WUK0 201 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-230ENST00000557427 FIG4Q92562 907 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 UCN3Q969E3 161 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 FAM162AQ96A26 154 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 ANKRD9Q96BM1 317 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-230ENST00000557427 VMP1Q96GC9 406 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 AURKBQ96GD4 344 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-230ENST00000557427 RNF145Q96MT1 663 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 SLC29A1Q99808 456 aa11.46□□□□□ -0.57
SHMT2-230ENST00000557427 BDH2Q9BUT1 245 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms